Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00516 ATGGATTTGGCTGAATTGTGGGCGATCTTCGGCCCAGGCGTCGCTGGGGCTATCTTCGGTGCTGGCTGGTGGTTTTGGGTTGACGCTGTCGTCTGCAGCTCTGTTTCCGTCTCCTTTGTTCACTATCTCCCTGGGATTTTTGCCTCTTTTGCCGCCCTTATGTTCAATTGCGTTCGGAAAGAGGACATCGACTACTCTCCTTATGATGATGGCGAATGGAGGTTGAAGCTATGGCTCTTCTTTGCATATGTTGTATCCTTTGTTTCTTTAGCGGCATCAGTTGGACTTTTGATACAGGATTCCCTTGTAAAAACTGGCCCTTCAGTGTGGACAGGAACTGCTGGGGTCCTGCAGTGTGTTTTTGTGTTGATCAGTGGGCTAATATACTGGACTTCTCACCCGGAGTAA 408 49.02 MDLAELWAIFGPGVAGAIFGAGWWFWVDAVVCSSVSVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYDDGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSLVKTGPSVWTGTAGVLQCVFVLISGLIYWTSHPE 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4345343 4347188 + Bda016485.1 Bda03g00516 3775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00516 135 Pfam Uncharacterised protein family (UPF0220) 13 133 IPR007919 -
Bda03g00516 135 PANTHER SMALL MEMBRANE PROTEIN-RELATED 3 134 IPR007919 -
Bda03g00516 135 PANTHER OS02G0566900 PROTEIN 3 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00516 - - - qsu:112025051 266.544
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00516 Bda11g00748 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00516 Bda-Chr3:4345343 Bda11g00750 Bda-Chr11:7521206 3.53E-93 dispersed
Bda11g00748 Bda-Chr11:7509246 Bda03g00516 Bda-Chr3:4345343 3.79E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g331 . Blo12g00688 . Bda03g00516 Bpe02g00083 . . Bma01g02636 Cmo04g02431 Cmo15g00735 . . . . . . . . . . . . . . . . . . . . . Cone4ag1370 Cone7ag1561 . . . . . . . . Bda11g00748 . . . . . . . . . . Car04g02244 Car15g00661 Cpe01g02019 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005321 3 1 2 2 2 1 2 1 1 1 2 1 2 1 1 2 0 2 2 0 1 1 1 2 0 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00516 Bda_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0