Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00519 ACCTCTGCGAACGACGAAGCCAATACTATCAGTATCATGGCTCAATCCGGGTCACTCTCCGCCGAGATCGAAGCTCTGAGGCAGCTAATGGAGGCGTTCAGAGCCTTCGACGGAGACAACGACGGCCGGATTTCAGCAGCAGAGTTAGGCGGGATCATGAGTTCCATAGGATACAATTTGAACGACCAAGACGTTCGAAGGATGATGCAGGAATGGGACAGAAACAGAGATGGTTTATTATCCCAGGCCGAGTTCATAGAGATGAACACGAAGAACATGGGGATCGCAGATGGGCTTGGTGGTTTGCTGGAATCAGCTCTTGACGTTCTGGAAGGTGAGGAAAGCGTGAGCGGAGAAGTGCTCTACGAAGCTCTGTGTAACGCGGGGCTCCATACCCACCTATCAATGGAGGACTGTATTGAGATTATTGCTGCCTTAGATGGAGATGAAGATGGAGCTGTGAGCTTGGAGGAGTTTCAGACCATAGTCAACATGTTCGTCTAG 504 50.6 TSANDEANTISIMAQSGSLSAEIEALRQLMEAFRAFDGDNDGRISAAELGGIMSSIGYNLNDQDVRRMMQEWDRNRDGLLSQAEFIEMNTKNMGIADGLGGLLESALDVLEGEESVSGEVLYEALCNAGLHTHLSMEDCIEIIAALDGDEDGAVSLEEFQTIVNMFV 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4357026 4357529 + Bda016488.1 Bda03g00519 3778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00519 167 Pfam EF-hand domain pair 27 88 IPR002048 GO:0005509
Bda03g00519 167 Pfam EF hand 144 163 IPR002048 GO:0005509
Bda03g00519 167 ProSiteProfiles EF-hand calcium-binding domain profile. 134 167 IPR002048 GO:0005509
Bda03g00519 167 ProSitePatterns EF-hand calcium-binding domain. 37 49 IPR018247 -
Bda03g00519 167 ProSitePatterns EF-hand calcium-binding domain. 147 159 IPR018247 -
Bda03g00519 167 SMART efh_1 138 166 IPR002048 GO:0005509
Bda03g00519 167 SMART efh_1 64 92 IPR002048 GO:0005509
Bda03g00519 167 SMART efh_1 28 56 IPR002048 GO:0005509
Bda03g00519 167 CDD EFh 28 88 IPR002048 GO:0005509
Bda03g00519 167 Gene3D - 2 96 - -
Bda03g00519 167 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 7 165 - -
Bda03g00519 167 ProSiteProfiles EF-hand calcium-binding domain profile. 60 95 IPR002048 GO:0005509
Bda03g00519 167 ProSiteProfiles EF-hand calcium-binding domain profile. 24 59 IPR002048 GO:0005509
Bda03g00519 167 PANTHER CALCIUM BINDING PROTEIN 7 165 - -
Bda03g00519 167 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Bda03g00519 167 SUPERFAMILY EF-hand 26 163 IPR011992 -
Bda03g00519 167 Gene3D - 105 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00519 - - K02183 zju:107420979 159.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00519 Bda-Chr3:4357026 Bda01g01797 Bda-Chr1:54181169 3.27E-22 dispersed
Bda03g00519 Bda-Chr3:4357026 Bda11g00452 Bda-Chr11:4774715 8.38E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g324 . . . Bda03g00519 . Bpe04g00474 . . . . Cma01g01406 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02369 Csa04g01828 . . . . . . . . . . Sed12g1443 Cmo01g01456 . . . . . . Cpe02g00536 Bhi09g02642 Tan01g3986 Cmetu07g0316 . Hepe01g2259 . . Cla11g01517 Cam11g1577 Cec11g1606 Cco11g1605 Clacu11g1732 Cmu11g1550 Cre11g1969 . . Chy07g00678 Cme07g00883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013187 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00519 Bda_Chr03 FPKM 7.279361 6.551822 4.773302 5.657248 2.798367 2.605969 2.438301 13.162832 12.634945