Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00522 ATGGACAGGGAGGATAACCTTCCAGAACCACCTGCTGTGACGAAGAGTCTATTTCGTCCTGTTGTCCCGGAAACTACTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTTTTCTTCATCCTCTCCGCCAGGATTCCTCCGTCAAGTGCAAGCCGCCTTCAAGCGGCATCGCCCTCAAGGAAAGAATCCAAAATCAATGATAAAGACTGAAGGAGAGGCCTCCTGTATCCTCATAAATCATGAATCCAAGCTCCATAATTGTCAGAAGGCACGAATTAATAAGAATTTGGGATCTGATAGTGGAATTTCTTTGATGATGAAGAGCGAACAGACTGATCCAGATCAACTGCACCATATCAAAAGTTTTTTGAGCCAACCTGTGACTCAATCGTCAGTGGCTGGGCGGTCTTGTGCGACCACAACATCTATTTACTCAACTTCAGCACCTTTGCATTATGCGACAACCTGTTGCTCTCATTTGCAGGAAGATAACAATTCTCATGGTGCACCGGAAGCAGCCACCTTTGATGTGAATTGTCAACCTCTAGCTCAAGGGATTGTGACATTGCCATCAAATGCTTCTACAAATAGCTGCTCTAATTTTGTTATTAATGAGTCATGCACGTCTTCTCTGGTCCCTGATTCTTCTATTAAAACCCAAATAAAACCAAAGGAAGATGATATTTCTAAAGAGCAAGAAAGCATAGTTCCTAAACAAACAAGCATTTTTAAAGAGGCCCCTCTTCCCCATGATAAGCTAAATGAAAGAAGTGGTGGTTATGAAAGTAACAATATACGTCCTCCCCAAAACTTGAATATTGCTGTGAAGGTGGATCCTTCCAAGATGGAAAAGCAAGAAAAAGTTGCAAGTAGTAAAGGAGCTACGATGGCAAGTAAAAGGAGTTATGATCCAGATTTGTTCTTTAAAGTAAATGGAAAGCTTTATCAAAGGCTTGGAAAGATAGGAAGTGGAGGAAGCAGTGAGGTTCACAAAGTAATTTCATCGGACTGTACCATCTATGCACTTAAAAAAATAAAGCTCAAAGGTCGTGATTATGCCACTGCTTATGGCTTTTGCCAGGAGATTGTGTATTTAAGTAAATTGAAAGGGAAGAACAATATCATACAACTCATAGATTATGAGGTTACAGATAAAATGCTGCTTCGGGAAGTTATGAATGGCTCCATGAGTCATAAAGAGGCTAGGGTCAAAGATGATGGGTACATATTTATGGTACTCGAATATGGGGAAATCGACTTGGCTAACATGCTGTCACAAAAATGGAAAGAAATGGATGGCTTCAATCAGACAATAGATGAGAACTGGCTTCGGTTCTATTGGCAGCAAATTCTTCTAGCTGTGAATACAATCCATGAGGAACGAATTGTGCACTCTGACCTCAAACCGGCTAACTTCCTTCTCGTCAAGGGTTCCTTGAAGCTAATTGACTTTGGGATTGCAAAAGCCATAATGAGTGATACTACCAATATCCAAAGGGAATCTCAGGTGGGTACACTTAGTTACATGTCTCCAGAGGCATTTATGTGCAACGAGAGTGATTCTAGTGGAAACGTGATCAAATGTGGTCGGCCGTCAGATATTTGGTCTCTCGGCTGCATTCTTTATCAGATGGTATATGGAAAGACCCCCTTCTCAGAGTATAAAACATTCTGGGCCAAGTTCAAAGTTATTACAGATCCGAATCATCGCATTATTTACGGACCACTTTCTAATCATCGCCTTCTCGATCTTATGAAGAAATGCCTTGCGTGGGACCGAAATGAGAGGTGGCGAATTCCTCAGTTACTTCAACACCCTTTTCTCATACCTCCAGTTCCACCACAGCTAGCTTTGTCTCAAAATCAAAGCTCTACGCTGCTTCAACTTATTGCTGAAACTTGTACAAATGACCCTCAAGCTTCTTTCTTGCTCTACTCTCAGCTTCAACAACTACTTACGGATCCAGTGAGACCAATGACATCTCTCTTGATCACATCAACTGAAAATCAATGCGATCTTTTCCCGCAAATATCAAATACTTACCTCCAGCTCCGGCAACAATCTGCAGACTCAAAGAGATGA 2103 41.46 MDREDNLPEPPAVTKSLFRPVVPETTTSSSSSSSSSSSSSSSSFSSSSPPGFLRQVQAAFKRHRPQGKNPKSMIKTEGEASCILINHESKLHNCQKARINKNLGSDSGISLMMKSEQTDPDQLHHIKSFLSQPVTQSSVAGRSCATTTSIYSTSAPLHYATTCCSHLQEDNNSHGAPEAATFDVNCQPLAQGIVTLPSNASTNSCSNFVINESCTSSLVPDSSIKTQIKPKEDDISKEQESIVPKQTSIFKEAPLPHDKLNERSGGYESNNIRPPQNLNIAVKVDPSKMEKQEKVASSKGATMASKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIVYLSKLKGKNNIIQLIDYEVTDKMLLREVMNGSMSHKEARVKDDGYIFMVLEYGEIDLANMLSQKWKEMDGFNQTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNESDSSGNVIKCGRPSDIWSLGCILYQMVYGKTPFSEYKTFWAKFKVITDPNHRIIYGPLSNHRLLDLMKKCLAWDRNERWRIPQLLQHPFLIPPVPPQLALSQNQSSTLLQLIAETCTNDPQASFLLYSQLQQLLTDPVRPMTSLLITSTENQCDLFPQISNTYLQLRQQSADSKR 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4368655 4373120 - Bda016491.1 Bda03g00522 3781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00522 700 SUPERFAMILY Protein kinase-like (PK-like) 315 638 IPR011009 -
Bda03g00522 700 Pfam Protein kinase domain 322 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00522 700 Gene3D Transferase(Phosphotransferase) domain 1 438 617 - -
Bda03g00522 700 ProSiteProfiles Protein kinase domain profile. 322 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00522 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Bda03g00522 700 MobiDBLite consensus disorder prediction 20 50 - -
Bda03g00522 700 SMART serkin_6 322 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00522 700 Gene3D Phosphorylase Kinase; domain 1 315 402 - -
Bda03g00522 700 MobiDBLite consensus disorder prediction 1 50 - -
Bda03g00522 700 CDD PKc_Mps1 320 615 - -
Bda03g00522 700 PANTHER MIXED LINEAGE PROTEIN KINASE 25 665 - -
Bda03g00522 700 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 25 665 IPR027084 GO:0004712|GO:0007093|GO:0051304
Bda03g00522 700 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00522 K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1] - jre:109013664 800.431
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00522 Bda13g01492 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00522 Bda-Chr3:4368655 Bda13g01492 Bda-Chr13:37985016 1.81E-77 dispersed
Bda03g00522 Bda-Chr3:4368655 Bda01g01408 Bda-Chr1:49972122 3.75E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69538 PF00069 Pkinase 1.70E-53 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00522 Bda_Chr03 FPKM 5.654708 6.505084 7.20973 6.848481 16.067204 13.463087 15.820425 10.646445 11.048721