Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00524 ATGGCTGCTAACGTTTCGATTAAGTCCAAGCCCTACCACCACCACGGCAACAATGTTAGTGTCTACGCCGTCCCCGAAGCTACCCGGACTAACTCCCCTAGTCCACCTTCCTCGCCTCCCCTTCAATCTAGCTTTTCACACTGCCGTCGGAGGCCACGCTCCAAACTGCATTCTCATCCACTCCGGGAGTTCTTTTCTGGTGGCTTTAGTCTCCGACGAAACGTTCGTAACTTTGTTTTTTTGCCTCTTCTTTACGTTTCTGGCTTGATCATGTGCATTGGTCCCTTTTCTGCTCTCTCGGGGAAGCCTCTGCCTCCTGGTTCACTCTATCGCAGCCATGAAATGTTTCAGAGACTCTGGAACGATATAGAAGCACAAAATTCATCCACGCTAGAGTTATCTTCAGTTTGGAAATATAAAAGACAGAAGGAGCTAAAGCCTTGTCTAAATTCATCAACCCCACGTCAATCTGACTCCCCTGGACCTTCTGGTTACTTAATTGTTGATGCTAATGGCGGGCTTAACCAACAACGATCTGCGATATGCAATGCAGTGGCTGTAGCTGGACTTTTAAATGCTATCTTAGTTATTCCTCGTTTTGAATTTCATAGCGTTTGGAGGGATTCAAGTACATTTGCCGATATATACGATGAAGATCATTTCATAGCCACTCTTGATGGATTTGTAAAAGTCGTCAAAGATCTACCTCAAAATTTGCTGGGAAAATATGATAATAACATTTCAAATGTTCCGAAATTTCATGTCCAAGCATGGGCTCCTACCAGTTATTACATGGGAGAAGTTTATCCTGTCTTACAAAGAGAAGGGGTTATTCGCATAGCCCCCTTTGCTAACAGATTGGCAATGAGTGTTCCGCCTCAGATACAATTCCTGAGATGTTTAGCAAATTATGAAGCTTTAAGATTCTCATCTTCTATCCTAAGTCTTGCGCAGAAACTAGTAAGCCGAATGATAGAGAAGAGTTTGAATGCTGAAGGAAAGTACCTCTCAGCTCACCTTCGTTTTGAGGAGGACATGGTGGCCTTCTCGTGCTGTGTCTACGATGGAGGTGAGTCTGAAAAGGTTGAAATGAATTCTGTTCGAGAGAAAGGCTGGAGGGAGAAGTTCAAACGAGAAGATCGCATTATTTTACCTGGCCTTAATCGAGTTAATGGGAAATGCCCACTAACCCCATTGGAGGTTGGACTGATGTTACGGGGAATGGGATTCAGTAAAAACACTTCAATTTATTTGGCATCTGGGAAAATATTCCAAGAAGAGAAACAATTAGCACCACTACAAAAGATGTTTCCTCATTTGCATACCAAGGAAACTCTTGCAACCTCAGAGGAGCTTGCTCCGTTCATGGGATATTCTTCGAGATTGGCGGCTCTGGACTACACAGTATGCCTATTCAGTGAGGTTTTTGTGACCACGCAGGGCGGAAATTTCCCACACTTTCTAATGGGTCACCGGAGATTCCTTAATGATGGACATGCTAAAACTATAATGCCTGATAAACGCAAGCTCGCTGTTCTTCTGGAAGACATGAGCATGAGTTGGAATGACTTCAAAGAGCAAATGGAAATTATGCTATCAGAAAGTGACCGCAAGGGGCTAATGGTCCCAAGAGTGAGAAAGATCAACAGAAAAACATCTGTCTACACTTTCCCTTTACCAGAATGCAGATGTCTACAGCGATCTCATAATGCCAATTTGAATCATGACCGCAACTTCACAATCATGGCCTCTAATCCACGAAAGCAGGCAATAGATACATAA 1782 43.6 MAANVSIKSKPYHHHGNNVSVYAVPEATRTNSPSPPSSPPLQSSFSHCRRRPRSKLHSHPLREFFSGGFSLRRNVRNFVFLPLLYVSGLIMCIGPFSALSGKPLPPGSLYRSHEMFQRLWNDIEAQNSSTLELSSVWKYKRQKELKPCLNSSTPRQSDSPGPSGYLIVDANGGLNQQRSAICNAVAVAGLLNAILVIPRFEFHSVWRDSSTFADIYDEDHFIATLDGFVKVVKDLPQNLLGKYDNNISNVPKFHVQAWAPTSYYMGEVYPVLQREGVIRIAPFANRLAMSVPPQIQFLRCLANYEALRFSSSILSLAQKLVSRMIEKSLNAEGKYLSAHLRFEEDMVAFSCCVYDGGESEKVEMNSVREKGWREKFKREDRIILPGLNRVNGKCPLTPLEVGLMLRGMGFSKNTSIYLASGKIFQEEKQLAPLQKMFPHLHTKETLATSEELAPFMGYSSRLAALDYTVCLFSEVFVTTQGGNFPHFLMGHRRFLNDGHAKTIMPDKRKLAVLLEDMSMSWNDFKEQMEIMLSESDRKGLMVPRVRKINRKTSVYTFPLPECRCLQRSHNANLNHDRNFTIMASNPRKQAIDT 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4376080 4379975 - Bda016493.1 Bda03g00524 3783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00524 593 MobiDBLite consensus disorder prediction 27 53 - -
Bda03g00524 593 Pfam GDP-fucose protein O-fucosyltransferase 165 494 IPR019378 -
Bda03g00524 593 PANTHER - 31 573 IPR024709 -
Bda03g00524 593 CDD O-FucT_plant 165 502 IPR024709 -
Bda03g00524 593 PANTHER O-FUCOSYLTRANSFERASE 10-RELATED 31 573 - -
Bda03g00524 593 PIRSF UCP009360 42 568 IPR024709 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00524 - - - jre:109013662 841.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01817 Bda-Chr1:54337724 Bda03g00524 Bda-Chr3:4376080 0 dispersed
Bda03g00524 Bda-Chr3:4376080 Bda09g00009 Bda-Chr9:248618 0 dispersed
Bda04g00960 Bda-Chr4:59276659 Bda03g00524 Bda-Chr3:4376080 3.12E-28 dispersed
Bda07g01642 Bda-Chr7:30661363 Bda03g00524 Bda-Chr3:4376080 9.82E-15 dispersed
Bda03g00524 Bda-Chr3:4376080 Bda11g00164 Bda-Chr11:2130880 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g312 . Blo12g00682 . Bda03g00524 . Bpe04g00478 . . . . Cma01g01403 Cma09g00811 . . . Cpe06g00645 Cpe07g00146 . . . . . . . Cla08g01128 Cam08g1584 Cec08g1154 Cco08g1280 Clacu08g1284 . Cre08g1066 Cone4ag1380 Cone7ag1551 Cone17ag1267 . Lsi04g02374 Csa04g01819 . . . . . . . . . . . Cmo01g01453 Cmo09g00804 . . . Car09g00726 . Cpe02g00539 Bhi09g02645 . . . Hepe01g2262 Mch11g0812 . Cla11g01520 Cam11g1580 Cec11g1609 Cco11g1608 Clacu11g1736 Cmu11g1554 Cre11g1972 Lsi08g00985 . Chy07g00668 Cme07g00876
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009726 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00524 Bda_Chr03 FPKM 26.669065 26.594578 21.762066 20.303024 37.794102 51.49855 41.570454 25.862032 25.498526