Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00534 ATGGATGATCCAGCGGATCTTGATTCCGTCGAGATGTCCCGGCCAAGCGTTCGTCGGAAATTGATCCAAGCGACGCTAATCCCTCATAAATCCCAGGAATGCGGTGTGGATGACGGGCTTGACGACGAGAAGGACAGCGGCGGGGAAGGGGAGTGCCGCGAGACGGACATAAAGAGAAGGAAGAAAAGGACTCCGGCTAAGAAGACGCCTCGCAAAGGAGTTTTAAAGAAGCCGAAGAAGTCAAAAGAGAAGCCGTCTGTTAATTTGACGCCAAAAAGAAATGAAGTAACTGACAGTGAAAGGGTATCTCCATCAATTCCCAATTTGCGGTTGGAAGCGAAAATGTTGGCAGAGGAAAATTCACGGATATTTGCAGGAAGAGAGTTACATCCATTTTTCTCAACTAGGAGAGGAAGTAAGAAATCTCAGGACACACCTGCTCTGGCTAATAATTCATGTTCCGTTGAGAGACAGAACAGAGAAATAAATTGTGGTCCAATCCACGTGCTTGAGAGAACCGAGGATGATATCACGCCTCTTGACTGGAGACATTGGATATTTTGTGAGTCTGTGTTCAGCAGACAATATGATTTAAAATACTCAAGGGAATCCTTTCTTGAAGGCTCTGTGGAGCCTCTAAATGTTTTTCAGCTTCCCATTATTATGTATCCTTGTGATGCATTGGTTTTTCAGAAAAATGAATCCTTGGTTCAGCGTCTAATTGAGAAAGAAGACGAACATGAGATAGCATCTACAGTGCCGTTAATTGCTGTTGATGAGGAGGGGATGCCGAATCACCTTGTAGAAGATTCAAAGAACAGCCCGGTGGATAAAGTATGTGACATTTCTAATTCTGAAATGAAGTCAAATACAGAGGAGCAAAATAGATTTCTTCAGAAAAGGTTGATGAGACACTATCACCATCATGATAGTTTATGGACGTACAAGTATCGTCCAGAGAAGGCCATAGAAGTATGTGGTAATCAGGAACAAGTTAAGTCTTTGAGCGAGTGGATACAGCTATGGCATGAAAAGAATCTGCAGAATAACAAAGAATTCACATGTGGAGATGGTGATGACATGGATGATAATGACTGTGACTATTCTCGGAGCATCTCTGACGTAGATGGGATAGATGAAGAGGCCACCTTAAAGAATGTTCTTCTAGTCACGGGACCAGCGGGGAGTGGCAAGTCTGCAGCTATATATGCTTGTGCAAAGGAGCAAGGTTTTAGGGTTTTAGAGTTCAGTGCATCCGATCATCGATCTGGAGCTGTTCTCAAGCAGTTGATTGGAGAGACATTACAATCTCATCAGCTGAATTGTTACCAAATGTCCAACATGCATCTTATAGTAAGACTCTACAGGGCTCAAGTCAATGCCTCATCACTGCCTGGCAGCTCAGGTGTCAATAGGTTTGGTAGTGGGGTGGTTGAGCTGATTCCTTTGTCTGATGAAGATTCTCAAGATGTCACTGAAATACCAGAATTTTTTGCGGCAGAAACTGAAACTGCCCGTAAACAAGTTGGAGTAAAGCCCTTAATTCTTCTTGAGGACGTGGATATCGTTTTTCCAGAAGATCGTGGTTTTATTTCTGTCCTACAAGATATTTATGAAACAGGAAAAGGGCCCATAATTTTGACAAGCAATGATGACAATCCGCTCCTACCAGACCAATTGAAGCGACTACAGGTGTCTTTCACGCAGCCTTCACTAAAGGACTTGCTTAGTCACATGCACGTGATTTGTGCTGCTGAGGGAGTCAACGTTAAACCTCAGTTACTGCAGAGATTTATCAAATCTTGTGAGGGAGATGTGCGTAAAATCATCATGCATCTCCAGTTCTGGTGCCAGGATGTAATATCGAGAGGAGGTAAGAAAGTGCAGCAAACATATGGCTCACTATTGTTTGATCTTGATGCTTTTCATCTGATACTACCGACTATAATCCCGTGGAGTTTCCCCTCTCTGTTATCTGAGCTGGTAGAGAAAGAGATCAACAAGTCATTTGCTTCCAGCAATCCTATTGCTTTCTCCCGAATGTATCCTCGAAGAAAGCTTGATTTGGTGGTATCATCTGATTCTGAAGATGATTTAGCCTGTAAGGATTATCCTTTAGTCGTAGATAAGAGTGCCGATGTCACTATTGAGCCAGACCTTGAAGTCAACGAGAAGTCTCTGTCTCATTTTCTAATATCTGGAAACTGCTTAGACCCACAATCTGATGAGATGCTTCGTGTGAAAGCAGAGAGGATGAATGGAAGTTATGATTTGTGTTCAGAACCTGCTGATGAGGTATGCGAATCAGTTGATAGGTTAGGTGCACCAGAATCGTCATTTGTTCCTGAGTCTCTGGATAATAAACCAGGGCTGTTAGCTGGAGCAACATCTTGGAGTCATGTTACTGAAACCATGAACATATCTGTAAACAATGGATTTTCACGGAACCTGTCACCTATCAGAGTTAATAATCTTGAAGAATGCCTAGGATTTAATAAAACTTCAAATATGGTAGAAAATAGTTGTTCTTTGCCTGAGCATTTCAGTATTCGAGGAGAAACTTCTCCATATGGGCCAGGGGAAGCTGGTACGAGTGCCTATCAAGTAATGGATGAATGTAGCCGAATGCATTTCAATCAGTCCAAGTTTGCTGAGAAGCATTTATTGACGGTGACAGCTAATATAGTGCAAGAATCATGGAAAAGACTACGGGTTTGTCATGAAGATCTAAGACATAACCTCGCCTCAGAAAAACAAGAAGCTTCTCAGATTGTTGAGCTTGCTCAAAGACTGAGCACTCTAATATCTGACTCTGACCTATTATTGTCGTGGTGTCAACCTCAGTTACTTATTTTGCAGTGTTTGGATGGAAAACCGATGCACTCAACTGGGGAAGTTGACACATTTAATTGGTGTGATGACCAATTGCAGATGGCATCAACAATAGCAAAGCATGGATTTTGTATCTATGCAAGAGACGTTGCTGCCATAGCATTCACTCTTGATTGTGAGAACAAAATGGATATTGTGTCAGAGATGCTGGGTTCCACTACTGATTCAATGACATTAGGTAAATTAGTTAGACAAGATATGAAGAAAAGTAGGACCTCATCTGCCGGAATTAACTTAGAGAGGAACCAACCACAAAGTGACTTGATGCCAGACAGATTATTTTTGTCAAGTAAAGGTGTTGCATACTTTGATTATCTTTCTTCACTTCGCCATATTTCAAAATCAGAATCCACCAGATTATCACAAGGAGATGATAGGACGAGAAGACGAAGGTATGGGATTGCACCAGTTCAATTATGTCAAGATGTCCAGTTGACAATTTTTCACACATGTCCTGTTCAATTATTGCTCATTTTGTTTTGTTGA 3378 41.86 MDDPADLDSVEMSRPSVRRKLIQATLIPHKSQECGVDDGLDDEKDSGGEGECRETDIKRRKKRTPAKKTPRKGVLKKPKKSKEKPSVNLTPKRNEVTDSERVSPSIPNLRLEAKMLAEENSRIFAGRELHPFFSTRRGSKKSQDTPALANNSCSVERQNREINCGPIHVLERTEDDITPLDWRHWIFCESVFSRQYDLKYSRESFLEGSVEPLNVFQLPIIMYPCDALVFQKNESLVQRLIEKEDEHEIASTVPLIAVDEEGMPNHLVEDSKNSPVDKVCDISNSEMKSNTEEQNRFLQKRLMRHYHHHDSLWTYKYRPEKAIEVCGNQEQVKSLSEWIQLWHEKNLQNNKEFTCGDGDDMDDNDCDYSRSISDVDGIDEEATLKNVLLVTGPAGSGKSAAIYACAKEQGFRVLEFSASDHRSGAVLKQLIGETLQSHQLNCYQMSNMHLIVRLYRAQVNASSLPGSSGVNRFGSGVVELIPLSDEDSQDVTEIPEFFAAETETARKQVGVKPLILLEDVDIVFPEDRGFISVLQDIYETGKGPIILTSNDDNPLLPDQLKRLQVSFTQPSLKDLLSHMHVICAAEGVNVKPQLLQRFIKSCEGDVRKIIMHLQFWCQDVISRGGKKVQQTYGSLLFDLDAFHLILPTIIPWSFPSLLSELVEKEINKSFASSNPIAFSRMYPRRKLDLVVSSDSEDDLACKDYPLVVDKSADVTIEPDLEVNEKSLSHFLISGNCLDPQSDEMLRVKAERMNGSYDLCSEPADEVCESVDRLGAPESSFVPESLDNKPGLLAGATSWSHVTETMNISVNNGFSRNLSPIRVNNLEECLGFNKTSNMVENSCSLPEHFSIRGETSPYGPGEAGTSAYQVMDECSRMHFNQSKFAEKHLLTVTANIVQESWKRLRVCHEDLRHNLASEKQEASQIVELAQRLSTLISDSDLLLSWCQPQLLILQCLDGKPMHSTGEVDTFNWCDDQLQMASTIAKHGFCIYARDVAAIAFTLDCENKMDIVSEMLGSTTDSMTLGKLVRQDMKKSRTSSAGINLERNQPQSDLMPDRLFLSSKGVAYFDYLSSLRHISKSESTRLSQGDDRTRRRRYGIAPVQLCQDVQLTIFHTCPVQLLLILFC 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4436814 4446080 + Bda016504.1 Bda03g00534 3793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00534 1125 MobiDBLite consensus disorder prediction 29 101 - -
Bda03g00534 1125 CDD AAA 372 435 - -
Bda03g00534 1125 Gene3D - 310 568 IPR027417 -
Bda03g00534 1125 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 79 670 IPR004582 GO:0006281
Bda03g00534 1125 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 10 77 IPR004582 GO:0006281
Bda03g00534 1125 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 669 1095 IPR004582 GO:0006281
Bda03g00534 1125 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 669 1095 - -
Bda03g00534 1125 MobiDBLite consensus disorder prediction 60 79 - -
Bda03g00534 1125 Gene3D - 570 631 - -
Bda03g00534 1125 MobiDBLite consensus disorder prediction 80 99 - -
Bda03g00534 1125 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 79 670 - -
Bda03g00534 1125 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 10 77 - -
Bda03g00534 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 624 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00534 - - - qlo:115959785 762.681
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g277 . Blo12g00671 . Bda03g00534 . Bpe04g00488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g01807 . . . . . . . . . . . . . . . . . . . Bhi09g02667 . . . Hepe01g2278 Mch11g0825 . Cla11g01532 Cam11g1591 Cec11g1620 Cco11g1621 Clacu11g1750 Cmu11g1566 Cre11g1982 . . Chy07g00650 Cme07g00858
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005441 1 2 1 1 1 0 1 1 0 3 1 1 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00534 Bda_Chr03 FPKM 3.256039 5.383985 10.280392 7.329643 1.573316 3.046032 1.655098 0.229978 0.766003