Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00550 ATGCTGTCGAAAGTCTTGAATCTTTCTCCGACCATCGCCGGAGTAACACTGCTTTCGTTGGGCAATGGTGCTCCCGATTTTTTCTCGAGTATTGTCTCGTTCACGAGATCCGGCGACGGAGATGTCGGCCTGAGCAGTGTCCTCGGCGGTACCTTTGTCGTCTCAAGCACCGTCGTGGGTGTTATTAGTATATTGGCCGGTTCTAATCAGATTACAATAGATAAAGTGAGCTTTGTTAGAGACGTACTCTTCTTTCTCTTTTCCCTCCTCATTCTTCTCGTAATCCTCATAATTGGCAAAATCAGCTTTCTGGGTTCCATCTGCTTTGTTTCTCTATACGTTATTTACGTCTGTTTGGTTTCTACGAAAATATTTTGCCTGAGGAGAGAAAATGCGGAGGCCGATGAAGAAAAAAGGATGCCATTTCTGGAGTACGTCGATAACGAAAAACCCATTTTTATGGAGGAGAGATGTAATCAAGGGAATGCCTGGTTTGCTCATTTTGAAAAATTTCGCCTTTCGAGTTCACGTACATGTGATTTTCTTGGTAAGGTCGTGTTTGTCTTAGAATTACCGCTTGATCTGCCGAGGAGACTGACGATTCCGGTGGTGGACGAGAGAAGATGGTCGAAGCCGTGGGCAGTAACGTCGGCGACGTTAGCACCAGTGTTTGCTGTCGCCGTCTGTACGACCCAGTTGGAAAACGTGGATTTAAAGATCCTTCACGTGGCCTATGTCGCAGCCGGATTACTGGGGATTGTGCTGGCGAATCTCACATTCCTGACCACCTCAACACATTCCCCTCCAACGAAATTTATATTCCCATGGCTCGTCGGAGGGTTTGTGATGAGCATCACTTGGACGTACGTAGTTGCAGAGGAATTAGTTTCCTTGCTGGTTTCTCTAGGGTACATACTGGGGATCAAACCTTCAGTTCTAGGGCTTACTGTCTTAGCCTGGGGCAACTCCCTCGGAGATCTGATAGCCAACGTCGCCATGGCCGTCAACGGAGGGCCAGATGGTGCCCAAATTGCAATCTCCGGTTGTTATGCAGGACCGACATTCAACATTCTGATGGGGTTGGGAGTGTCGTTCGTCTTCTCTTCATGGTCGGTTTATCCTTCCCCGTACGTGATTCCGACAGACCCTTCTCTGTATTTGACGATCGGATTCCTGACCGGTGGACTGCTCTGGGGGCTCGTCATCTTGCCCAAGAAGAAGATGAAGTTGGACAAGTTACTGGGCTGTGGCCTTCTCGCCATTTACTTCTGTTTTTTGTCTTTAAGGATATCCCTCAATCTTAGTTATTTCAAAATCTAA 1320 47.5 MLSKVLNLSPTIAGVTLLSLGNGAPDFFSSIVSFTRSGDGDVGLSSVLGGTFVVSSTVVGVISILAGSNQITIDKVSFVRDVLFFLFSLLILLVILIIGKISFLGSICFVSLYVIYVCLVSTKIFCLRRENAEADEEKRMPFLEYVDNEKPIFMEERCNQGNAWFAHFEKFRLSSSRTCDFLGKVVFVLELPLDLPRRLTIPVVDERRWSKPWAVTSATLAPVFAVAVCTTQLENVDLKILHVAYVAAGLLGIVLANLTFLTTSTHSPPTKFIFPWLVGGFVMSITWTYVVAEELVSLLVSLGYILGIKPSVLGLTVLAWGNSLGDLIANVAMAVNGGPDGAQIAISGCYAGPTFNILMGLGVSFVFSSWSVYPSPYVIPTDPSLYLTIGFLTGGLLWGLVILPKKKMKLDKLLGCGLLAIYFCFLSLRISLNLSYFKI 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4570802 4572121 - Bda016519.1 Bda03g00550 3809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00550 439 Pfam Sodium/calcium exchanger protein 277 429 IPR004837 GO:0016021|GO:0055085
Bda03g00550 439 Pfam Sodium/calcium exchanger protein 2 120 IPR004837 GO:0016021|GO:0055085
Bda03g00550 439 Gene3D - 214 430 IPR044880 -
Bda03g00550 439 Gene3D - 8 132 IPR044880 -
Bda03g00550 439 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 2 436 - -
Bda03g00550 439 PANTHER CATION/CALCIUM EXCHANGER 1 2 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01991 Bda-Chr1:56271379 Bda03g00550 Bda-Chr3:4570802 1.85E-21 dispersed
Bda03g00550 Bda-Chr3:4570802 Bda03g01496 Bda-Chr3:53329502 1.59E-128 dispersed
Bda03g00550 Bda-Chr3:4570802 Bda09g01061 Bda-Chr9:40818150 9.99E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00550 K13754 - jre:109000857 488.419