Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00582 ATGAGGGAGGACGACTCTAATTGGTTCTCAAGGTGGGAGGAGGAGCTCCCATCTCCTGACGAATTAATGCCTCTGTCACAAACCCTAATCACTCCTGATCTTGCTCTCGCTTTTAAAATCCGAAATCCCTCCAACTCTCCCCCCCATCGAGGCGCTCTTCCTCCTCCTCCCAGTCATTTAGCTTCCTCCGCTGCTGCTGGCGGCTTTGGTGGAGGCACCACCCAACCCAACTCATCTGAGTTTGCGGATTCAGCCGATTTGGGTTCAGGAGCTGCCGGTGACGAACCGGCTAGAACTCTCAAGCGGCCGCGGCTGGTTTGGACACCCCAGCTCCACAAGCGATTCGTAGACGCGGTGGCGCATTTGGGGATCAAGAATGCTGTGCCAAAGACGATAATGCTGCTGATGAGTGTGGATGGGTTGACTAGGGAGAACGTGGCTAGCCATTTGCAGAAGTACCGGCTATATCTGAAACGAATGCAGGGATTATCCAGCGGGAGCGGCGGAGGAGCCGCTGTAGTTGGCGCTGGAGGCGTTGATCCTGCTACAGATCATTTGTTTGCAAGCTCTCCTGTACCGCCTCATTTCTTGCACCCACATCCAGGTCGCCCAAATTCCGACCATTTTTTGCCTTTTGTGCCGGTGACATCTCTGCAGCAACACCACCATCACCAGCAGCAGATTGTGGCGGCGGCAGCAGCTGCTGTCCATCCTCAGCTGCAGCCTCAGTATCACCGACAGGTCGGCCATTTTGGGTCAACTCCGAGTGGGCAATTCGAGCATCCGTTTTCAACGAGGCAAACACAGCCAGTTCACAGGGTGGGTACACCATTGCATAATTCAATGCTGAATCACGTTGAGGACTTGGAATTGGCTAATGCTACGGGAGGAAGGAAGGTTATTGCTCTATTTCCAACTGGGGATGGTTAA 930 53.87 MREDDSNWFSRWEEELPSPDELMPLSQTLITPDLALAFKIRNPSNSPPHRGALPPPPSHLASSAAAGGFGGGTTQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMLLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGSGGGAAVVGAGGVDPATDHLFASSPVPPHFLHPHPGRPNSDHFLPFVPVTSLQQHHHHQQQIVAAAAAAVHPQLQPQYHRQVGHFGSTPSGQFEHPFSTRQTQPVHRVGTPLHNSMLNHVEDLELANATGGRKVIALFPTGDG 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4845047 4845976 - Bda016553.1 Bda03g00582 3841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00582 309 MobiDBLite consensus disorder prediction 68 84 - -
Bda03g00582 309 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
Bda03g00582 309 Gene3D - 99 161 - -
Bda03g00582 309 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Bda03g00582 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Bda03g00582 309 MobiDBLite consensus disorder prediction 40 96 - -
Bda03g00582 309 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 308 - -
Bda03g00582 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Bda03g00582 309 MobiDBLite consensus disorder prediction 1 23 - -
Bda03g00582 309 MobiDBLite consensus disorder prediction 1 18 - -
Bda03g00582 309 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 308 IPR044841 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00582 - - - csv:101216969 410.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00582 Bda-Chr3:4845047 Bda09g01515 Bda-Chr9:46870769 6.75E-43 dispersed
Bda11g00695 Bda-Chr11:6921384 Bda03g00582 Bda-Chr3:4845047 1.91E-165 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda13g01813 . 1 248 G2-like Transcription Factor Family AT5G16560 51.1 9.3e-48 188.0
Bda01g02090 CCT 10 246 G2-like Transcription Factor Family AT1G25550 54.7 6.8e-58 221.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.6 1.4e-55 213.4
Bda07g01528 CCT 13 299 G2-like Transcription Factor Family AT1G68670 51.6 2.7e-67 252.7
Bda01g02090 CCT 10 279 G2-like Transcription Factor Family AT1G68670 53.2 2.5e-65 246.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT3G25790 51.6 6.8e-44 174.5
Bda09g01515 . 1 269 G2-like Transcription Factor Family AT3G46640 52.6 1.5e-64 243.4
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 5.5e-73 271.2
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT5G05090 51.6 9.1e-68 253.8
Bda11g00350 . 12 312 G2-like Transcription Factor Family AT4G13640 54.2 4.8e-62 235.0
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT4G13640 54.6 1.2e-57 220.3
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda05g01256 . 45 274 G2-like Transcription Factor Family AT1G69580 51.7 5.9e-40 161.8
Bda14g00491 . 1 279 G2-like Transcription Factor Family AT1G79430 53.9 2.0e-70 263.1
Bda11g00350 . 24 200 G2-like Transcription Factor Family AT1G79430 56.4 4.5e-38 155.6
Bda13g00487 . 36 189 G2-like Transcription Factor Family AT1G79430 64.1 1.9e-36 150.2
Bda09g01572 . 56 269 G2-like Transcription Factor Family AT2G01060 68.7 6.2e-60 227.6
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT3G10760 65.7 1.9e-94 342.8
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT3G10760 64.8 3.3e-91 332.0
Bda11g00695 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 9.7e-64 240.4
Bda03g00582 . 1 208 G2-like Transcription Factor Family AT2G40970 64.6 2.6e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15666 PF00249 Myb_DNA-binding 1.40E-07 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00582 Bda_Chr03 FPKM 8.756364 8.746242 15.14075 17.069944 8.98376 9.400929 8.145292 34.872772 35.743526