Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00582 ATGAGGGAGGACGACTCTAATTGGTTCTCAAGGTGGGAGGAGGAGCTCCCATCTCCTGACGAATTAATGCCTCTGTCACAAACCCTAATCACTCCTGATCTTGCTCTCGCTTTTAAAATCCGAAATCCCTCCAACTCTCCCCCCCATCGAGGCGCTCTTCCTCCTCCTCCCAGTCATTTAGCTTCCTCCGCTGCTGCTGGCGGCTTTGGTGGAGGCACCACCCAACCCAACTCATCTGAGTTTGCGGATTCAGCCGATTTGGGTTCAGGAGCTGCCGGTGACGAACCGGCTAGAACTCTCAAGCGGCCGCGGCTGGTTTGGACACCCCAGCTCCACAAGCGATTCGTAGACGCGGTGGCGCATTTGGGGATCAAGAATGCTGTGCCAAAGACGATAATGCTGCTGATGAGTGTGGATGGGTTGACTAGGGAGAACGTGGCTAGCCATTTGCAGAAGTACCGGCTATATCTGAAACGAATGCAGGGATTATCCAGCGGGAGCGGCGGAGGAGCCGCTGTAGTTGGCGCTGGAGGCGTTGATCCTGCTACAGATCATTTGTTTGCAAGCTCTCCTGTACCGCCTCATTTCTTGCACCCACATCCAGGTCGCCCAAATTCCGACCATTTTTTGCCTTTTGTGCCGGTGACATCTCTGCAGCAACACCACCATCACCAGCAGCAGATTGTGGCGGCGGCAGCAGCTGCTGTCCATCCTCAGCTGCAGCCTCAGTATCACCGACAGGTCGGCCATTTTGGGTCAACTCCGAGTGGGCAATTCGAGCATCCGTTTTCAACGAGGCAAACACAGCCAGTTCACAGGGTGGGTACACCATTGCATAATTCAATGCTGAATCACGTTGAGGACTTGGAATTGGCTAATGCTACGGGAGGAAGGAAGGTTATTGCTCTATTTCCAACTGGGGATGGTTAA 930 53.87 MREDDSNWFSRWEEELPSPDELMPLSQTLITPDLALAFKIRNPSNSPPHRGALPPPPSHLASSAAAGGFGGGTTQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMLLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGSGGGAAVVGAGGVDPATDHLFASSPVPPHFLHPHPGRPNSDHFLPFVPVTSLQQHHHHQQQIVAAAAAAVHPQLQPQYHRQVGHFGSTPSGQFEHPFSTRQTQPVHRVGTPLHNSMLNHVEDLELANATGGRKVIALFPTGDG 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4845047 4845976 - Bda016553.1 Bda03g00582 3841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00582 309 MobiDBLite consensus disorder prediction 68 84 - -
Bda03g00582 309 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
Bda03g00582 309 Gene3D - 99 161 - -
Bda03g00582 309 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Bda03g00582 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Bda03g00582 309 MobiDBLite consensus disorder prediction 40 96 - -
Bda03g00582 309 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 308 - -
Bda03g00582 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Bda03g00582 309 MobiDBLite consensus disorder prediction 1 23 - -
Bda03g00582 309 MobiDBLite consensus disorder prediction 1 18 - -
Bda03g00582 309 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 308 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00582 Bda-Chr3:4845047 Bda09g01515 Bda-Chr9:46870769 6.75E-43 dispersed
Bda11g00695 Bda-Chr11:6921384 Bda03g00582 Bda-Chr3:4845047 1.91E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15666 PF00249 Myb_DNA-binding 1.40E-07 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00582 - - csv:101216969 410.223