Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00598 ATGGCTGACCCCTACTCAAATTTCTTTACAGGTCTCTTCAAGCTCAACACGATCCACCATAACCAACCTTCTCCAAACCATCCGCCGCACCCTGTTTACTCTCACAACTTTTTCAGCCAGAGCCACCCTTTCCACCACCAAACCCCCCCGCCTTCTCCACCTCTCCGGCAAGCCCTTCCCCTCCTCAGCCTCACGCCTCTCAACCAGCAACAACAAGAAGATCAATCTCACCATTCCTGCTTCACCGCCATGGAAGTGGATCAGAAAAGCTTAAAACAGAAAGAGGACGAAGACGAAGAAGACGATGACGTGGCTTCTGTAACTGTTGCCCTCCATATAGGGTTACCTAGCCCTAGTTCAGCTGAACTTGCTTCTGTTCTCTCTGCTTCTTCGTCTGAAACCACTGATCTTAAAGATCATGGAGATGTAGATGATTTAGGGTACCCTATCAACAGATTAAACAAGGGTCAGTATTGGATCCCCACTCCTTCTCAGATCCTCATTGGTCCAACACAGTTTTCTTGCCCTGTTTGCTGTAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGCCATGGATCTCAGTATAGACGAGGACCAGAATCACTGAGAGGAACTCAACCAACGGGGATGCTAAGGCTTCCTTGCTACTGCTGCGCAACTGGTTGCAGAAACAACATAGACCATCCAAGGGCTAAGCCCCTTAAAGATTTTAGAACCCTCCAAACGCATTACAAAAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTGGGAAAGCCTTTGCAGTGAAAGGAGATTGGAGAACTCATGAGAAAAACTGTGGAAAGCTTTGGTATTGCATTTGTGGGTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCATGTAAAAGCTTTTGGCAAGGAGCACGGAGCTTATGGAGTTGATGGGTTTGAAGAAGATGATGAACCTGCGTCTGAGGTTGAACAAGATAATGATGAATCTTTGCAGTAA 1008 45.93 MADPYSNFFTGLFKLNTIHHNQPSPNHPPHPVYSHNFFSQSHPFHHQTPPPSPPLRQALPLLSLTPLNQQQQEDQSHHSCFTAMEVDQKSLKQKEDEDEEDDDVASVTVALHIGLPSPSSAELASVLSASSSETTDLKDHGDVDDLGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGKEHGAYGVDGFEEDDEPASEVEQDNDESLQ 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4956923 4958904 + Bda016569.1 Bda03g00598 3857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00598 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Bda03g00598 335 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Bda03g00598 335 SUPERFAMILY beta-beta-alpha zinc fingers 239 277 IPR036236 -
Bda03g00598 335 MobiDBLite consensus disorder prediction 311 335 - -
Bda03g00598 335 SMART c2h2final6 173 195 IPR013087 -
Bda03g00598 335 SMART c2h2final6 257 277 IPR013087 -
Bda03g00598 335 MobiDBLite consensus disorder prediction 316 335 - -
Bda03g00598 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 277 IPR013087 -
Bda03g00598 335 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 332 - -
Bda03g00598 335 SUPERFAMILY beta-beta-alpha zinc fingers 169 195 IPR036236 -
Bda03g00598 335 Gene3D Classic Zinc Finger 234 311 - -
Bda03g00598 335 MobiDBLite consensus disorder prediction 38 57 - -
Bda03g00598 335 Gene3D Classic Zinc Finger 172 195 - -
Bda03g00598 335 PANTHER ZINC FINGER PROTEIN WIP2 1 332 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00598 Bda-Chr3:4956923 Bda04g00737 Bda-Chr4:56575275 2.55E-132 dispersed
Bda11g00677 Bda-Chr11:6795926 Bda03g00598 Bda-Chr3:4956923 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15669 None None None None Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00598 - - jre:108986074 489.574