Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00603 ATGGAGCCAACTGCAGGATTTATCTCTGGATTCAATCCCATTGGTCATGTTCCTGAAGAATCCGGACTCGAACTGCTCCAGTTTCGCGATGAGATTCATAGACTGATGTCTTTCCCTCAAGAAAATTCTAGCTCATTCACTGCACTTCTGGAACTTCCTTCGACGCAAGCCATGGACCTTCTCCATTCTCCCGACTCTGTCAGTGATCCAACGACGGGGAAACTCCCACCCCATTCTCTCCATAATTCAGTTAGGAACGGTCACAGACTTCACTTCCAAGAATTTGACGACCATTTGACCTTCCCTACTGACAGATTGACTGTTGAACGAGCAGCCAAGCTCCCGGCCTTCGCCGGAGAATGTTCTATGGAAATGTGGAGGTCGCTGCCATCGAACATTCGAGCGAATTTGGAGAAAGTAAAGAACGAGCTCATCATGGAGCCTGAGGAATCAGAAGCGTTAATATCTGATCCAACGGTGGAAAACTCCAACCAGAGATCAGCGAAGAGGAAGAACCGAGAGAAGAAGGGCAAAGGATTAACGAAGAAATGCAAAAACGAAAGCTCTGAAGACGCAGAGAAGCTTCCGTACGTTCATGTCCGAGCTCGTCGCGGTCAAGCTACAGACAGCCATAGCTTGGCAGAGCGAGCGAGGAGAGAGAAGATAAACGCTCGAATGAAGCTCCTCCAAGATCTGGTCCCTGGTTGCAGCAAGATTGTATTTGAGCACGATTGGCTTTCAAATAGTTTATGCTTTCATCTGCAGATATCGGGCACGGCGCTAGTTCTCGATGAAATTATCAACCATGTGCAGTCCCTGCAACGTCAAGTGGAGTTCTTGTCAATGAGACTTGCCTCAGTCAATCCAACCATTGATTTCAATCTAGATACAATTTTAGGTGCAGAGAGCGAGTATACAACGGATGGTAACTTTTCAAGCATGCCCACGGATTCGACGTGGCCCGAGGTCCTTTTAGGTGGAAATAGGCAACACCGACTGCGGCAGCAACTACAAGAATGGAAACATGATGGACTTAACCAGCCTGGTTGGGAGAGAGGAGAAGAAAATCCAAATTTCATCACTCCAGAGCACTCATTTTTGACCTACGACTCCTCTGCACATTCAGGTACAATCCAATCCATGACCTGA 1149 47.52 MEPTAGFISGFNPIGHVPEESGLELLQFRDEIHRLMSFPQENSSSFTALLELPSTQAMDLLHSPDSVSDPTTGKLPPHSLHNSVRNGHRLHFQEFDDHLTFPTDRLTVERAAKLPAFAGECSMEMWRSLPSNIRANLEKVKNELIMEPEESEALISDPTVENSNQRSAKRKNREKKGKGLTKKCKNESSEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQDLVPGCSKIVFEHDWLSNSLCFHLQISGTALVLDEIINHVQSLQRQVEFLSMRLASVNPTIDFNLDTILGAESEYTTDGNFSSMPTDSTWPEVLLGGNRQHRLRQQLQEWKHDGLNQPGWERGEENPNFITPEHSFLTYDSSAHSGTIQSMT 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4999864 5003437 - Bda016574.2 Bda03g00603 3862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00603 382 MobiDBLite consensus disorder prediction 151 192 - -
Bda03g00603 382 Pfam Helix-loop-helix DNA-binding domain 210 237 IPR011598 GO:0046983
Bda03g00603 382 PANTHER TRANSCRIPTION FACTOR BHLH60 21 380 - -
Bda03g00603 382 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 380 IPR024097 GO:0006355
Bda03g00603 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 292 IPR036638 GO:0046983
Bda03g00603 382 Coils Coil 263 283 - -
Bda03g00603 382 SMART finulus 212 279 IPR011598 GO:0046983
Bda03g00603 382 Gene3D - 203 292 IPR036638 GO:0046983
Bda03g00603 382 CDD bHLH_AtBPE_like 196 298 - -
Bda03g00603 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 273 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00603 Bda05g01068 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00603 Bda-Chr3:4999864 Bda05g01068 Bda-Chr5:59121607 1.73E-28 dispersed
Bda03g00603 Bda-Chr3:4999864 Bda03g01607 Bda-Chr3:55365534 6.60E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15670 PF00010 HLH 0.00012 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00603 - - csv:101205014 381.719