Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00605 ATGAGACCCCCCACGCTGAACATTTTCCCATCTCAGCCAATGCACGTAGAGCCCTCTTCAACACAAGCAGCTACTCCCGCAGTGCCTCTCTCTTCTTCATCCAATAATGGTCCAAACAGACCATTGGAGACCAGTGCGACCATGGAATTAGGCAACCCAACCAACGACGCCACTCCCTCTGGAACTGCTCCTCAACCTTCGAAATCTATCAAGCGTGAGGGTAACCGGCGAGGTCCAACGTCCAGTTCTGAGCAGGAAGGACCCAAGACGCCCGATCCTAAGACGTTAAGAAGGCTCGCCCAGAATAGAGAAGCTGCGAGGAAAAGCAGGCTTAGGAAAAAGGCCTACGTTCAGCAATTAGAGACCAGTAGAATTAAGCTTACTCAGCTAGAACAAGAGCTGCAAAGAGCAAGATCTCAGGGTATAATTTTCGGAGGAGCAAATGTGTTAGGAGATCCAGGTCTTTCAGTTGGCATCAACAACATTAGCCCAGACGCTGCCGTGTTTGATATGGAGTACGGGAGGTGGCTGGAGGAACATCACCGGATAATGTGCGAGCTCAGAGCGGCAGTGCAGGAACATCTGCCGGAAAACCAGCTCCGGTTGTATGTAGAAAACTGCATAGCACACCTGGATGAGATAATTAATCTGAAAAGCATGGTCGCTAAATCTGACGTTTTTCATATCATTTCCGGCTTGTGGATGACTTTGGCTGAGCGTTGCTTTATTTGGATTGGTGGATTTAGACCCTCTGAGCTCATCAAGATTATTTTGGGTCAAATCGAGCCATTAACGGAGCAACAAATGATGGGAGTTTGTGGGTTACAACAGTCGACTCAGGAAGGAGAAGAAGCTCTATCTCAAGGGCTTGAAGCTCTGAATAATTCACTTTCAGAAGCCATAACATCTGATTCATTGACTTCTCCTCCAAACATGGCTAACTACATGGGTCAGATGGCTCTAGCTATCAACAAGCTCTCCACCATTGAAGGCTTCGTCAGACAGGTAACCCTATTTCTTTATAATATCTTACTTTTTACGTTAATCTTATATTATGAATCAATACTATTAGTTTAA 1077 46.05 MRPPTLNIFPSQPMHVEPSSTQAATPAVPLSSSSNNGPNRPLETSATMELGNPTNDATPSGTAPQPSKSIKREGNRRGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQELQRARSQGIIFGGANVLGDPGLSVGINNISPDAAVFDMEYGRWLEEHHRIMCELRAAVQEHLPENQLRLYVENCIAHLDEIINLKSMVAKSDVFHIISGLWMTLAERCFIWIGGFRPSELIKIILGQIEPLTEQQMMGVCGLQQSTQEGEEALSQGLEALNNSLSEAITSDSLTSPPNMANYMGQMALAINKLSTIEGFVRQVTLFLYNILLFTLILYYESILLV 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5023199 5026048 - Bda016576.1 Bda03g00605 3864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00605 358 ProSiteProfiles DOG1 domain profile. 166 358 IPR025422 GO:0006351|GO:0043565
Bda03g00605 358 Coils Coil 113 140 - -
Bda03g00605 358 Gene3D - 93 142 - -
Bda03g00605 358 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 92 136 IPR004827 GO:0003700|GO:0006355
Bda03g00605 358 MobiDBLite consensus disorder prediction 1 97 - -
Bda03g00605 358 CDD bZIP_HBP1b-like 94 146 - -
Bda03g00605 358 SUPERFAMILY Leucine zipper domain 95 137 IPR046347 GO:0003700|GO:0006355
Bda03g00605 358 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 97 112 IPR004827 GO:0003700|GO:0006355
Bda03g00605 358 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 1 336 - -
Bda03g00605 358 Pfam bZIP transcription factor 94 134 IPR004827 GO:0003700|GO:0006355
Bda03g00605 358 SMART brlzneu 90 143 IPR004827 GO:0003700|GO:0006355
Bda03g00605 358 Pfam Seed dormancy control 184 257 IPR025422 GO:0006351|GO:0043565
Bda03g00605 358 MobiDBLite consensus disorder prediction 12 69 - -
Bda03g00605 358 PANTHER TRANSCRIPTION FACTOR TGA9 1 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00605 Bda-Chr3:5023199 Bda03g01528 Bda-Chr3:54183585 4.70E-100 dispersed
Bda03g00605 Bda-Chr3:5023199 Bda05g01018 Bda-Chr5:58609526 9.58E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15671 PF14144 DOG1 3.20E-28 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00605 K14431 - pvy:116117562 523.087