Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00638 ATGCAGTCCGATAACTCGGAGCTCTACAGATTGCTCGCCGGAAATGGTTTCTTTGACGTCGGACGGAAAAGCTTATGCAGTTCTTCCTCGTACTGCCCTCTCGATCAATTTTCTGGAACGCCAGACACGCTTCCGTCTGCACATGAAAGAGCTCTCGTTGCTCTCAGGAATCACAAGGAGGCTGAGAAGAGGAGGAGAGAGAGAATTAATTCGCATCTCAACAAGCTTCGGAATCTTCTTTCCTGTAATTCCAAACTACTTTTTAATTTTTTTCAGACAGACAAAGCTTCTCTTCTAGCAAAAGTTGTTCAACGCGTGAAAGAACTAAAGCAACAAGCTTCTGAAATATCTGGAATCGAGACTTTCCCTTCAGAAACCGATGAAATCTCTGTGTTATCCGGCGATTTGTCCGGCGACGGGAGATCCATTTTCAAAGCCTCTTTGTGCTGCGAAGATCGCTCCGACCTCATACCAGACCTCATCGATATCCTCCACTCTCTCCACTTGAAGACTCTAACAGCTGAAATGGCGACCCTCGAAGGAAGGACCAAGAACATTCTCGTTGTTGCCCCCGAAAAAGATTCCAGCGTCGAATCGGTGCATCTCCTTCAAAACGCATTGAAATCTCTGCTTGAAAGTTCCAATCCCAGCGAAAGATCGAAGAGAAGACGGGTTTCAGATCGCCATGACCGACCGTGA 699 46.78 MQSDNSELYRLLAGNGFFDVGRKSLCSSSSYCPLDQFSGTPDTLPSAHERALVALRNHKEAEKRRRERINSHLNKLRNLLSCNSKLLFNFFQTDKASLLAKVVQRVKELKQQASEISGIETFPSETDEISVLSGDLSGDGRSIFKASLCCEDRSDLIPDLIDILHSLHLKTLTAEMATLEGRTKNILVVAPEKDSSVESVHLLQNALKSLLESSNPSERSKRRRVSDRHDRP 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5431357 5432550 - Bda016618.1 Bda03g00638 3897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00638 232 Coils Coil 59 79 - -
Bda03g00638 232 CDD bHLH_AtAIG1_like 49 131 - -
Bda03g00638 232 MobiDBLite consensus disorder prediction 211 232 - -
Bda03g00638 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 117 IPR036638 GO:0046983
Bda03g00638 232 MobiDBLite consensus disorder prediction 215 232 - -
Bda03g00638 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 109 IPR011598 GO:0046983
Bda03g00638 232 PANTHER TRANSCRIPTION FACTOR BHLH30 4 228 IPR045847 GO:0003700|GO:0006355
Bda03g00638 232 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 4 228 - -
Bda03g00638 232 SMART finulus 59 115 IPR011598 GO:0046983
Bda03g00638 232 Pfam Helix-loop-helix DNA-binding domain 57 109 IPR011598 GO:0046983
Bda03g00638 232 Gene3D - 49 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02101 Bda-Chr1:57108307 Bda03g00638 Bda-Chr3:5431357 4.55E-45 dispersed
Bda03g00638 Bda-Chr3:5431357 Bda10g01120 Bda-Chr10:45186331 1.03E-43 dispersed
Bda01g00405 Bda-Chr1:30485686 Bda03g00638 Bda-Chr3:5431357 5.37E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15678 PF00010 HLH 1.60E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00638 - K22484 qsu:111998080 292.352