Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00658 ATGAACGACTTGCTTTCTTCCACCTCCTTCCCTCGGGAAGAACACGTCATCGAGATGACGGACCCGGCGGCGTCTTCTCAGGGTGCACAACTCGGCAAATTCTTCAAAGACGTCGAGGCCATTAAAGAAGATCTTAGAGAGCTGGAGTGCCGCCGTGTAAATCTCCAGAGCTCTCACGAGAAGAGCAAAACTCTCCACAACGCTAAGGCGGTGAAAGAGCTGAGGTCGAACATGGACGCTGACGTCTCGCTGGCTCTGAGTAAGGCGAAGCTAATCAAGGCCCAGCTCGAGGCTCTCGACCGGTCCAACGCCGCGAATCGAAGCTTTCCCGGGTGCGGCCCGGGATCGTCGTCGGACCGGACGCGAACCTCCGTTGTGAACGGGCTGAGAAAGAATTTGAAGGATTCGATGGAGAACTTCAGCGCTCTGAGGCAGAAGATCTCGTCGGAGTACAGAGAGACTGTACAACGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAGACCGTTGATCTTTTGATCTCCTCAGGCGAAAGCGAGACGTTTTTACAGAAAGCGATACAACAGCAAGGGAGAGGAAGGATTCTGGACACCATAAACGAGATTCAAGAGAGGCAAGACGCAGTGAAAGAGCTGGAGAAGAATCTGAAGGAGCTGCACCAGGTGTTCATGGACATGGCCGTTCTGGTTCAAGCTCAGGGGGAGCAGCTCGACGACATCGAGAGCCATGTGGCTCGTGCTCATTCCATCGTCAGAGACGGCACCAACCAGTTACACACGGCGAGGGTCCACCAGAAGAGCACCAGAAAATGGACTGTTATAGCCATTATTATATTGCTTATAATCATCTTGATCATCGTTCTCAGCCTTCGGCCGTGGAAGTAG 891 52.97 MNDLLSSTSFPREEHVIEMTDPAASSQGAQLGKFFKDVEAIKEDLRELECRRVNLQSSHEKSKTLHNAKAVKELRSNMDADVSLALSKAKLIKAQLEALDRSNAANRSFPGCGPGSSSDRTRTSVVNGLRKNLKDSMENFSALRQKISSEYRETVQRRYFTVTGENPDEKTVDLLISSGESETFLQKAIQQQGRGRILDTINEIQERQDAVKELEKNLKELHQVFMDMAVLVQAQGEQLDDIESHVARAHSIVRDGTNQLHTARVHQKSTRKWTVIAIIILLIIILIIVLSLRPWK 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5593717 5594700 - Bda016639.1 Bda03g00658 3917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00658 296 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bda03g00658 296 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 291 - -
Bda03g00658 296 SUPERFAMILY t-snare proteins 31 256 IPR010989 GO:0016020|GO:0016192
Bda03g00658 296 Coils Coil 126 146 - -
Bda03g00658 296 Coils Coil 197 224 - -
Bda03g00658 296 Gene3D - 197 292 - -
Bda03g00658 296 CDD SNARE_syntaxin1-like 200 260 - -
Bda03g00658 296 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Bda03g00658 296 SMART tSNARE_6 196 263 IPR000727 -
Bda03g00658 296 PANTHER SYNTAXIN 9 291 IPR045242 -
Bda03g00658 296 Pfam SNARE domain 237 289 IPR000727 -
Bda03g00658 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Bda03g00658 296 SMART SynN_4 26 152 IPR006011 GO:0016020
Bda03g00658 296 CDD SynN 31 188 IPR006011 GO:0016020
Bda03g00658 296 Coils Coil 38 58 - -
Bda03g00658 296 Gene3D - 28 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00430 Bda-Chr1:31064708 Bda03g00658 Bda-Chr3:5593717 2.61E-176 dispersed
Bda03g00658 Bda-Chr3:5593717 Bda09g01276 Bda-Chr9:44512231 1.38E-123 dispersed
Bda03g00658 Bda-Chr3:5593717 Bda03g00659 Bda-Chr3:5600504 6.62E-139 tandem
Bda01g00422 Bda-Chr1:30755288 Bda03g00658 Bda-Chr3:5593717 2.61E-176 wgd
Bda03g00658 Bda-Chr3:5593717 Bda05g01127 Bda-Chr5:59493476 5.97E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00658 K08486 - csv:101208931 434.106