Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00659 ATGAACGACTTGCTTTCTTCCACCTCCTTCCCTCGGGAAGAACACGTCATCGAGATGACGGACCCGGCGGCGTCTTCTCAGGGTCTCGGCAAATTCTTCAAATACGTCGAGGCCATTAAAGAAGATCTTAGAGAGCTGGAGTGCCGCCGTGTAAATCTCCAGAGCTCTCACGAGAAGAGCAAAACTCTCCACAACGCTAAGGCGGTGAAAGAGCTGAGGTCGAACATGGACGCTGACGTCTCGCTGGCTCTGAGTAAGGCGAAGCTAATCAAGGCCCAGCTCGAGGCTCTCGACTGGTCCAACGCCGCAATTCGAAGCTGTCCTGGGTGCGGCCCGGGATCGTCGTCGGACCGGACGCGGACCTCCGTTGTGAACGGGCTGAGAAAGAATTTGAAGGATTCGATGGAGAACTTCAGCGCTCTGAGGCAGAAGATCTCGTCGGAGTACAGAGAGACTGTACAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGACAAGACTGTTGATCTTTTGATCTCCTTAGGCGAACGCGAGACGTTCTTACAGAAAGCGATACAACAGCAAGTTAGAGGGAGTATTCTGGACACCATAATTGAGAAGAGCACCAGGTGTTCTTTGGACCAGGAGCAAGGGGGAGGGAGGATTTTTATACACAGGACGAGGGTCCACCAGAAGAGCACCAGAAAATGGACTGTTATAGCCATTATTATTTTGCTTATAATCATCTTGATCATCGTTCTCAGCCTTCGGCCATGGAAATAG 768 51.56 MNDLLSSTSFPREEHVIEMTDPAASSQGLGKFFKYVEAIKEDLRELECRRVNLQSSHEKSKTLHNAKAVKELRSNMDADVSLALSKAKLIKAQLEALDWSNAAIRSCPGCGPGSSSDRTRTSVVNGLRKNLKDSMENFSALRQKISSEYRETVQRRYFTVTGENPDDKTVDLLISLGERETFLQKAIQQQVRGSILDTIIEKSTRCSLDQEQGGGRIFIHRTRVHQKSTRKWTVIAIIILLIIILIIVLSLRPWK 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5600504 5601364 - Bda016640.1 Bda03g00659 3918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00659 255 Pfam SNARE domain 220 248 IPR000727 -
Bda03g00659 255 Coils Coil 124 144 - -
Bda03g00659 255 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 205 - -
Bda03g00659 255 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 221 250 - -
Bda03g00659 255 SMART SynN_4 24 150 IPR006011 GO:0016020
Bda03g00659 255 CDD SynN 29 186 IPR006011 GO:0016020
Bda03g00659 255 PANTHER SYNTAXIN 9 205 IPR045242 -
Bda03g00659 255 Coils Coil 36 56 - -
Bda03g00659 255 Gene3D - 25 207 - -
Bda03g00659 255 PANTHER SYNTAXIN 221 250 IPR045242 -
Bda03g00659 255 Pfam Syntaxin 31 205 IPR006011 GO:0016020
Bda03g00659 255 SUPERFAMILY t-snare proteins 29 199 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00659 Bda-Chr3:5600504 Bda05g01127 Bda-Chr5:59493476 8.79E-93 dispersed
Bda03g00658 Bda-Chr3:5593717 Bda03g00659 Bda-Chr3:5600504 6.62E-139 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00659 K08486 - csv:101208931 303.908