Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00660 ATGGCGACGTACTTCCAGGGAAACTCCGATTTCCAACCACCTGACGGCTTACAAACTCTAGTCCTGATGAATCCTGCCTACTCGCAGTACTCCGACACACCCTCTCCGGCCCCCGGCAACTTCGTTTTCCTCAACCCTCAGGTTGGAAATTCCCTCTATCCCCTCAATCTTCCTCATGCGCCGCCATCTCTCTCTCAGTACTTGGTCGGCGTCCCGCTTTCTGCCAACACCTCGCCGGCTACCTCCCAAGACCCGAACTGTCTATCCATGCACACCCACCACGATGTTTCTGCCTTGCATGGCTACATCCCGCGAACACAAAGTAGCTTTTGGAGCTCAATTGATCAAACCTCATCGGTGGCGCGTGAAGCCACACGCTCGAAGGAAGGACTGTCTCTCACCCTCTCTTCTCATCCTCCTGGATATGGATTAGTCCAAATTCCATCCCGAGCTCAACGAGAAGTATCTGGCGAGGATGTGCGTATTTCAGGAGGATCATCTTCCTCAGCTTCCGGCGTTACCAACAACATTCCAGCAATTCGAGGCATGTTGCATAGCTCGAAGTACTTGAGAGCAGCTCAGGAGCTTCTCGATGAAGTAGCAAACGTCGGCAATAATGGAGTTAAGAAAGAGAACCTGAAGAAGGCTCAGAGTCATCGGACCAAGCTGGAGGAGTCACTGGCGGCTGCTGGAGATAATTCAGTCAGAGTGGAAGAGGAAGGGAAGCCGGGTTCTGAGCTTTCTGCTGCCGATAGGCAAGAAATCCAGATGAAGAAGGCCAAGCTTATTAACATGCTTGACGAGGTGGAGCAAAGATATAGACAATACCACCATCAAATGCAGATCCTCATTTCCTCTTTCGAACAAGCGGCAGGAATAGGCTCTGCAAGAACATACACAGCCTTGGCGCTTCAGACAATCTCTAAGCAATTCAGGTGTTTAAAAGACGCAATCACTGCTCAAATTCGAGTAGCAAACAAAAACCTAGGCGAAGAAGACGGCCATGGAAAACTTGAAGGTTCAAGACTTAGATTTGTAGACCATCATCTCAATCAACAGCGGGCTCTTCAGAGCTTGGGAATGATCCAGCACAATGCCTGGAGACCCCAGAGAGGATTGCCTGAGAGATCAGTTTCTGTTCTTCGAGCATGGCTATTCGAACACTTTCTTCACCCGTATCCAAAAGATTCTGACAAACACATGCTGGCAAAACAGACAGGACTGACGAGAAGCCAGGTCTCGAATTGGTTCATTAATGCTCGAGTTCGTTTATGGAAGCCAATGGTAGAAGAAATGTACACGGAGGAAATAAAGGAGCAAGAACAGACCTTATCAGCAGAAAAAAGCAGCAAAAGCAACGACGAAACAACTTCGAAATCCACAACACCGTCGCCGCAAGAAAAGAGTCCTCCGACGAAAAATCAACTTTCAGGTCTCAATTCGAAACAGGGCGATTCTTTGCATCACCATGCTCCCCCTGCAATTCCTTTTTCTTCCACGGCAACATCAGTTGCAGCCGAAAATGTTCGAAGCCAATCCGGGTTTTGGCTCATTGGGTCTTCAGAACTTGATGGAATCACACAAGGAAGTCCAAAGAGGCAACGGATTGCTGAAACGACACAGTCCCCAAACAGCATGCCTATAAACATTGATATGAAACCAGGGGAAGCCAGTAATGAGCAAGTTTTTATGAAGTTTAACAATGGCAGGCACGGCAGAGATGGCTATTCTTTCATTGGAGGTCAAGCTAATTTCATCGGAGGTTTTGGCCAATACCCAATTGCCGATATTGACAGGTTCGATGCAGAGCCATTCCCGACGGGATTTTCTGGCAATGGCGTTTCTCTCACCCTCGGACTTCACCACTCAGAAAATCTCTCTCTGTCAGTGGCCAATCAAAGTTTCCTTCCGAACCAGACTATAAATTTTGGGAGACGAGTTGACATCGGCGAACCAAATGGTTTCGATGCAATAAACATATCAACACCGCACTCCACATCTGCATTTGACGGCATCGATATACAAAACCGGAAAAGATTTGTGGCGCAATTGTTGCCGGACTTTGTGGCCTGA 2073 48.14 MATYFQGNSDFQPPDGLQTLVLMNPAYSQYSDTPSPAPGNFVFLNPQVGNSLYPLNLPHAPPSLSQYLVGVPLSANTSPATSQDPNCLSMHTHHDVSALHGYIPRTQSSFWSSIDQTSSVAREATRSKEGLSLTLSSHPPGYGLVQIPSRAQREVSGEDVRISGGSSSSASGVTNNIPAIRGMLHSSKYLRAAQELLDEVANVGNNGVKKENLKKAQSHRTKLEESLAAAGDNSVRVEEEGKPGSELSAADRQEIQMKKAKLINMLDEVEQRYRQYHHQMQILISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITAQIRVANKNLGEEDGHGKLEGSRLRFVDHHLNQQRALQSLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEIKEQEQTLSAEKSSKSNDETTSKSTTPSPQEKSPPTKNQLSGLNSKQGDSLHHHAPPAIPFSSTATSVAAENVRSQSGFWLIGSSELDGITQGSPKRQRIAETTQSPNSMPINIDMKPGEASNEQVFMKFNNGRHGRDGYSFIGGQANFIGGFGQYPIADIDRFDAEPFPTGFSGNGVSLTLGLHHSENLSLSVANQSFLPNQTINFGRRVDIGEPNGFDAINISTPHSTSAFDGIDIQNRKRFVAQLLPDFVA 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5622800 5625148 - Bda016643.1 Bda03g00660 3919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00660 690 SMART HOX_1 367 431 IPR001356 GO:0003677
Bda03g00660 690 Pfam Associated with HOX 183 319 IPR006563 -
Bda03g00660 690 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Bda03g00660 690 SUPERFAMILY Homeodomain-like 368 434 IPR009057 -
Bda03g00660 690 MobiDBLite consensus disorder prediction 446 484 - -
Bda03g00660 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 647 - -
Bda03g00660 690 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Bda03g00660 690 MobiDBLite consensus disorder prediction 225 248 - -
Bda03g00660 690 SMART prehox3 177 320 IPR006563 -
Bda03g00660 690 MobiDBLite consensus disorder prediction 526 548 - -
Bda03g00660 690 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 647 - -
Bda03g00660 690 CDD homeodomain 367 428 IPR001356 GO:0003677
Bda03g00660 690 Gene3D - 363 441 - -
Bda03g00660 690 MobiDBLite consensus disorder prediction 436 497 - -
Bda03g00660 690 Coils Coil 213 233 - -
Bda03g00660 690 Coils Coil 252 279 - -
Bda03g00660 690 MobiDBLite consensus disorder prediction 526 549 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00660 Bda03g01628 CCT
Bda03g00660 Bda05g01130 CCT
Bda01g00423 Bda03g00660 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00515 Bda-Chr1:32123874 Bda03g00660 Bda-Chr3:5622800 5.59E-89 dispersed
Bda03g00660 Bda-Chr3:5622800 Bda07g00489 Bda-Chr7:6125759 5.95E-85 dispersed
Bda08g01259 Bda-Chr8:51315713 Bda03g00660 Bda-Chr3:5622800 1.50E-68 dispersed
Bda13g01607 Bda-Chr13:39601813 Bda03g00660 Bda-Chr3:5622800 1.16E-49 dispersed
Bda01g00423 Bda-Chr1:30787966 Bda03g00660 Bda-Chr3:5622800 0 wgd
Bda03g00660 Bda-Chr3:5622800 Bda03g01628 Bda-Chr3:55639780 0 wgd
Bda03g00660 Bda-Chr3:5622800 Bda05g01130 Bda-Chr5:59513484 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15680 PF07526 POX 8.50E-48 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00660 - - jre:108982860 874.004