Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00671 ATGTCAGGCGGTGCTGGAGCTCAAAATCAACAGGTTCAGCCTCCGCCGGCGTCTAGCGGCCAGATCGTGCCTCCATTGAGGCGGCACTTGGCTTTTGCGTCGACGAAGCCGCCTTTCTTTCCTTCTGATGGTTATCATCGCTTCAACGGCGGTAATTGCAAAGTGTTTGATCAGGAGCCTGAAGTAATTGTTGTTAAGTCTCCACAATTAAAGCGAAAGGGTGCATCAGATAAGAGAGGCATTCAATCAAATGAGTGGACCAGAAGTCCTGGATGTACTAAACCCATTAATAGTCCTTTTCAGACACCTGCATCATCATCGAAAGGAGAAAGGGTGTATAACGTGTCAAAGGCTTCAAAGGGTTCTAGATCTGGGCCTCAAACACCTATTTCAACTGCCAGCTGCTCTTCTCCTCTTACTCCAGCAAGCAATTGTCGATATGACAGTTCCCTAGGTATTTTAACTAAAAAGTTTATCAATTTGATAAAGCATGCTGAGGATGGGATTCTTGACTTAAACAAGGCTGCAGAAACTTTGGAGGTGCAAAAAAGGAGAATATATGACATAACAAATGTCCTGGAAGGAATAGGTCTTATTGAAAAGAAGCTCAAGAACAGAATACGGTGGAAGGGCTTTTATGATTCGAAGCCTGGGAATGCGGATGGTGATGTCTCCATATTACAGGCAGAAGTTGGAAGCCTTACCATTGAAGAGCACAGATTAGACGACAAGACAAGAGAATTGCAGGAAAGATTGAGGTCCTTGAGTGAAGATATAAACAATCAAAAATGGCTTTTTGTTACAGAAGAAGATATTAAAAGCCTACCTGGCTTTCAGAATGAAACACTAATAGCCGTTAAAGCTCCACATGGCACAACTCTTGAAGTCCCAGATCCTGAAGAAGATATTGATTATCCTCAGAAGAGATATAGGATAATTCTCAGAAGCACAATGGGTCCGATTGATGTTTACCTTGTCAGTAAGTTTGAGGAGAAATTTGAGGAGATGGAAGTGATCGAACCATCCCAGAGCTTCCAACTAGTTTCCAGTTCTGGGTCTAACGAACCATCAGCAATAGAAATGCCCAATTTGGAGATCATACAAAAGGAAGTAACTGAGCCAAATCCACGACAGACCAATCAAAGAAGCCTTGATTTCAATGAGTCCCATGATTATTCTGGAGTGATGAAGATTGTTCCTTCAGAATTTGATAATGATGCTGATTACTGGCTTTTATCTGATGCTGAAGTTAGCATTACGGACATGTGGAGAACTGAATCAAGTGTTAGTTGGAATGAGCCAAACATGCTTCATGCAGACTTTGGGATATCTGATCTCGGAGCCACAATGTCTCAAACTCCTCTACCTGATATTGCTGATGCACCTACTACTGCTGTCAACTATCATCAAAGATGA 1416 42.3 MSGGAGAQNQQVQPPPASSGQIVPPLRRHLAFASTKPPFFPSDGYHRFNGGNCKVFDQEPEVIVVKSPQLKRKGASDKRGIQSNEWTRSPGCTKPINSPFQTPASSSKGERVYNVSKASKGSRSGPQTPISTASCSSPLTPASNCRYDSSLGILTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGFYDSKPGNADGDVSILQAEVGSLTIEEHRLDDKTRELQERLRSLSEDINNQKWLFVTEEDIKSLPGFQNETLIAVKAPHGTTLEVPDPEEDIDYPQKRYRIILRSTMGPIDVYLVSKFEEKFEEMEVIEPSQSFQLVSSSGSNEPSAIEMPNLEIIQKEVTEPNPRQTNQRSLDFNESHDYSGVMKIVPSEFDNDADYWLLSDAEVSITDMWRTESSVSWNEPNMLHADFGISDLGATMSQTPLPDIADAPTTAVNYHQR 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5691855 5695498 + Bda016654.2 Bda03g00671 3930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00671 471 Coils Coil 238 258 - -
Bda03g00671 471 Gene3D - 140 213 IPR036388 -
Bda03g00671 471 MobiDBLite consensus disorder prediction 80 138 - -
Bda03g00671 471 MobiDBLite consensus disorder prediction 1 25 - -
Bda03g00671 471 PANTHER TRANSCRIPTION FACTOR E2F 13 462 IPR015633 GO:0000978|GO:0006357
Bda03g00671 471 Coils Coil 162 182 - -
Bda03g00671 471 CDD E2F_DD 224 327 IPR032198 GO:0046983
Bda03g00671 471 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Bda03g00671 471 Pfam E2F transcription factor CC-MB domain 227 327 IPR032198 GO:0046983
Bda03g00671 471 Gene3D - 220 328 - -
Bda03g00671 471 MobiDBLite consensus disorder prediction 67 138 - -
Bda03g00671 471 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 13 462 - -
Bda03g00671 471 SUPERFAMILY E2F-DP heterodimerization region 224 328 IPR037241 -
Bda03g00671 471 MobiDBLite consensus disorder prediction 1 17 - -
Bda03g00671 471 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Bda03g00671 471 SUPERFAMILY Winged helix DNA-binding domain 146 209 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00683 Bda-Chr2:47790281 Bda03g00671 Bda-Chr3:5691855 8.13E-13 dispersed
Bda03g00671 Bda-Chr3:5691855 Bda09g01394 Bda-Chr9:45834440 1.07E-152 dispersed
Bda01g00346 Bda-Chr1:29132992 Bda03g00671 Bda-Chr3:5691855 1.58E-40 wgd
Bda01g00442 Bda-Chr1:31407369 Bda03g00671 Bda-Chr3:5691855 4.21E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15682 PF16421 E2F_CC-MB 7.60E-32 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00671 K06620 - zju:107432237 614.379