Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00671 ATGTCAGGCGGTGCTGGAGCTCAAAATCAACAGGTTCAGCCTCCGCCGGCGTCTAGCGGCCAGATCGTGCCTCCATTGAGGCGGCACTTGGCTTTTGCGTCGACGAAGCCGCCTTTCTTTCCTTCTGATGGTTATCATCGCTTCAACGGCGGTAATTGCAAAGTGTTTGATCAGGAGCCTGAAGTAATTGTTGTTAAGTCTCCACAATTAAAGCGAAAGGGTGCATCAGATAAGAGAGGCATTCAATCAAATGAGTGGACCAGAAGTCCTGGATGTACTAAACCCATTAATAGTCCTTTTCAGACACCTGCATCATCATCGAAAGGAGAAAGGGTGTATAACGTGTCAAAGGCTTCAAAGGGTTCTAGATCTGGGCCTCAAACACCTATTTCAACTGCCAGCTGCTCTTCTCCTCTTACTCCAGCAAGCAATTGTCGATATGACAGTTCCCTAGGTATTTTAACTAAAAAGTTTATCAATTTGATAAAGCATGCTGAGGATGGGATTCTTGACTTAAACAAGGCTGCAGAAACTTTGGAGGTGCAAAAAAGGAGAATATATGACATAACAAATGTCCTGGAAGGAATAGGTCTTATTGAAAAGAAGCTCAAGAACAGAATACGGTGGAAGGGCTTTTATGATTCGAAGCCTGGGAATGCGGATGGTGATGTCTCCATATTACAGGCAGAAGTTGGAAGCCTTACCATTGAAGAGCACAGATTAGACGACAAGACAAGAGAATTGCAGGAAAGATTGAGGTCCTTGAGTGAAGATATAAACAATCAAAAATGGCTTTTTGTTACAGAAGAAGATATTAAAAGCCTACCTGGCTTTCAGAATGAAACACTAATAGCCGTTAAAGCTCCACATGGCACAACTCTTGAAGTCCCAGATCCTGAAGAAGATATTGATTATCCTCAGAAGAGATATAGGATAATTCTCAGAAGCACAATGGGTCCGATTGATGTTTACCTTGTCAGTAAGTTTGAGGAGAAATTTGAGGAGATGGAAGTGATCGAACCATCCCAGAGCTTCCAACTAGTTTCCAGTTCTGGGTCTAACGAACCATCAGCAATAGAAATGCCCAATTTGGAGATCATACAAAAGGAAGTAACTGAGCCAAATCCACGACAGACCAATCAAAGAAGCCTTGATTTCAATGAGTCCCATGATTATTCTGGAGTGATGAAGATTGTTCCTTCAGAATTTGATAATGATGCTGATTACTGGCTTTTATCTGATGCTGAAGTTAGCATTACGGACATGTGGAGAACTGAATCAAGTGTTAGTTGGAATGAGCCAAACATGCTTCATGCAGACTTTGGGATATCTGATCTCGGAGCCACAATGTCTCAAACTCCTCTACCTGATATTGCTGATGCACCTACTACTGCTGTCAACTATCATCAAAGATGA 1416 42.3 MSGGAGAQNQQVQPPPASSGQIVPPLRRHLAFASTKPPFFPSDGYHRFNGGNCKVFDQEPEVIVVKSPQLKRKGASDKRGIQSNEWTRSPGCTKPINSPFQTPASSSKGERVYNVSKASKGSRSGPQTPISTASCSSPLTPASNCRYDSSLGILTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGFYDSKPGNADGDVSILQAEVGSLTIEEHRLDDKTRELQERLRSLSEDINNQKWLFVTEEDIKSLPGFQNETLIAVKAPHGTTLEVPDPEEDIDYPQKRYRIILRSTMGPIDVYLVSKFEEKFEEMEVIEPSQSFQLVSSSGSNEPSAIEMPNLEIIQKEVTEPNPRQTNQRSLDFNESHDYSGVMKIVPSEFDNDADYWLLSDAEVSITDMWRTESSVSWNEPNMLHADFGISDLGATMSQTPLPDIADAPTTAVNYHQR 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5691855 5695498 + Bda016654.2 Bda03g00671 3930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00671 471 Coils Coil 238 258 - -
Bda03g00671 471 Gene3D - 140 213 IPR036388 -
Bda03g00671 471 MobiDBLite consensus disorder prediction 80 138 - -
Bda03g00671 471 MobiDBLite consensus disorder prediction 1 25 - -
Bda03g00671 471 PANTHER TRANSCRIPTION FACTOR E2F 13 462 IPR015633 GO:0000978|GO:0006357
Bda03g00671 471 Coils Coil 162 182 - -
Bda03g00671 471 CDD E2F_DD 224 327 IPR032198 GO:0046983
Bda03g00671 471 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Bda03g00671 471 Pfam E2F transcription factor CC-MB domain 227 327 IPR032198 GO:0046983
Bda03g00671 471 Gene3D - 220 328 - -
Bda03g00671 471 MobiDBLite consensus disorder prediction 67 138 - -
Bda03g00671 471 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 13 462 - -
Bda03g00671 471 SUPERFAMILY E2F-DP heterodimerization region 224 328 IPR037241 -
Bda03g00671 471 MobiDBLite consensus disorder prediction 1 17 - -
Bda03g00671 471 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Bda03g00671 471 SUPERFAMILY Winged helix DNA-binding domain 146 209 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00671 K06620 E2F3; transcription factor E2F3 - zju:107432237 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00683 Bda-Chr2:47790281 Bda03g00671 Bda-Chr3:5691855 8.13E-13 dispersed
Bda03g00671 Bda-Chr3:5691855 Bda09g01394 Bda-Chr9:45834440 1.07E-152 dispersed
Bda01g00346 Bda-Chr1:29132992 Bda03g00671 Bda-Chr3:5691855 1.58E-40 wgd
Bda01g00442 Bda-Chr1:31407369 Bda03g00671 Bda-Chr3:5691855 4.21E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00825 . 3 372 E2F-DP Transcription Factor Family AT3G48160 53.2 3.2e-93 339.0
Bda05g00254 . 80 283 E2F-DP Transcription Factor Family AT5G02470 54.6 2.2e-59 226.1
Bda03g00671 . 14 467 E2F-DP Transcription Factor Family AT2G36010 52.2 4.1e-119 425.2
Bda09g01394 BCT 2 381 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-109 392.5
Bda09g01394 BCT 25 409 E2F-DP Transcription Factor Family AT5G22220 58.6 1.8e-103 373.2
Bda03g00671 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.5 1.2e-86 317.4
Bda02g00683 BCT 17 306 E2F-DP Transcription Factor Family AT5G22220 61.7 1.4e-79 293.9
Bda02g00683 BCT 149 305 E2F-DP Transcription Factor Family AT1G47870 60.5 3.8e-46 182.6
Bda05g00254 . 80 283 E2F-DP Transcription Factor Family AT5G02470 54.6 2.2e-59 226.1
Bda09g01394 BCT 25 409 E2F-DP Transcription Factor Family AT5G22220 58.6 1.8e-103 373.2
Bda03g00671 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.5 1.2e-86 317.4
Bda02g00683 BCT 17 306 E2F-DP Transcription Factor Family AT5G22220 61.7 1.4e-79 293.9
Bda03g00671 . 14 467 E2F-DP Transcription Factor Family AT2G36010 52.2 4.1e-119 425.2
Bda09g01394 BCT 2 381 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-109 392.5
Bda02g00683 BCT 149 305 E2F-DP Transcription Factor Family AT1G47870 60.5 3.8e-46 182.6
Bda14g00825 . 3 372 E2F-DP Transcription Factor Family AT3G48160 53.2 3.2e-93 339.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15682 PF16421 E2F_CC-MB 7.60E-32 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00671 Bda_Chr03 FPKM 4.086286 4.010123 1.679816 1.755257 7.440289 6.702159 7.08081 0.88986 0.806049