Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00691 ATGGTCATCAGAGGCTCGAACTCTTTAGTTGACCGTTTCTTCGATTTACTTCGCTTCTCGGGTCTACATGGTGACGTTGACCTATCAAGGGCTATTCATGCTTGGAGTCTGAAGCTTGAAGAAGATACCTATCTGGGTAATGCTTTAATTGCAGCTTATTTAAGACTGGGGTTTGTCTCTGATGCTAATAAGTCGAATCGGGAACAGGAAGCTATAGAGCTCTTTCTTAGAATGCGGGTTGCAGGAATTGAACCTAATGAATATACCTATGTTGCCATTTTGACTGCTTGCATTCGAATTATGAATCTTCAGTTAGCTTTACAAGTCCATGCTATTGTGGTCAAAATGGGTTATTTGAATTGTGTTTTCGTTTCGAATGCTCTTATGGGAGCCTACAGCAATTGTGGGGAATTAAATTCTGTACTTAGATTGTTTGAGGAATTGCTTGAGAGAGATATTGCTACTTGGAATACTGTTATATCAAGTTTGGTGAAGGAATACATGTATGATAAAGCATTTGATTACTTTAGCGAAATGCAGCACAACGATGGGCTTAGAATAGATCATTTTACGCTTTCTTCTCTTATGACTGCTTGTGCTGCCTGCTCTTCAGCATTAAAAGGACGACAACTTCATGCCCATGCTATCAAAGTGGGGTTGGAGAGTCATTTGAGCGTAGGCAATGCGCTTATTGGGTTCTACACTATCTGTGGAAGTTTAAATGACATAATGTTTATATTTGAGGTAATGCCTACTAAGGATGTCATTACCTTTACAGAGTTGATTTCGTCATATATGGAATTTGGATTGTTGGATATGGCTGTCGAAGTATTTAATAAGATGCCGGAGAGGAATTGCATATCTCACAATGCTATTTTGGCTGGGTTTTCTAAAAATGGTGAGGGCTTCAGAGCGCTGGAATTTTTCATAGAAATGATAAAGGAGGGCACAGAATTATCAGCCTTCTCCTTGTCTAGTGTTGCTAGTGCTTGTGGGTTGCTTGGGGATTGTGAAATTAGCAAGCAGATTCATGGTTTTATCATCAAATGTGGTGGTTTGTCAAATGACTACGTGGAAACTGCATTGTTTGATATGTGTACAAAGTGTGAAAGAATGGATGATGCCGAAAGGATGTTTCAGCAACATCCGTTGGACGGTGATGGGACTGCTAAGTTAACTTCATTAATATGTGGGTACTCACGGAATGGACAATTTGATAAAGGCGTCTCTCTTTTTCACTCTAGTCGATTGAAAGGAACTATATTTATTGATGAAATTGCAGCTTCTACTATTCTCGGTATCTGTGGTAGTATAGGATTTCATGAAATGGGTAAGCAAATTCACTGTCACTCTCTTAAATCTGGTTTTTTATCTGATGTGGGGGTTGGAAATGCCACCCTTTGCATGTACTCAAAGTGCTCAACCATGGAAGATGCAAGTAGAGTGTTCAATACAATGTCTTTACACGATATAGTTTCTTGGAATGGTTTGATTTCTGGGCATTTGCTCCAATGGCAGGGGGATGAAGTTTTGGCCATTTGGAAAACTATGGAAAATAAAGGTATAAAACCAGATGACATTACCTTTGCTTTGGTCATTTCAGCTTACAAATATACTTATTTGAATTTAGTTGATCATTGCCGTAGCTTATTCTTGTCTATGAAAAGTGTTTATAACATTCAGTCAAATTCTGAGCATTACGCCTCCTTTGTGAGCGTATTGGGTCGATGGGGTCTGCTTGAAGAGGCAGAAGAAACAATCAGGAAAATGCCATTTGAGCCAAACGTTGGAGTTTGGCGAGCTTTGCTAGATAGTTGTAGAATCCATTCAAATGCAGTAATAGGAAAACGAGTCGAGAGACAAATTCTGGGTTTGAAGCCAAAAGATCCTTCTTCCTACATATTACTTTCGAATCTGTTTTCAGCGGCAGGAAGATGGCAGAGTTGCGAAATGGCAAGACAAGACATGAGAAAAAAAGGGATAAAAAAACTCCCAGTTCAAAGCTGGATTATCATTGATAACAAAATCCATTCATTTTATGGGAGAGATAAGTCCCACCCACAAACAAAAGACATTTACAGGGGACTAGAGATCCTAATATTAGAATGCCTAAAAGCCGGGTATGTTCCAGACACGAGCTTCGTTCTTCACGAGGTTGAAGAACATCAAAAGAAGGATTTTGTGTTTTATCACAGCGTAAAACTTGCAGGAACATATGGGATTTTGATGTCAAGGGGAGGGAAACCGATTCGAATAGTGAAGAACGTCCTACTATGTGGAGATTGCCATGAATTCTTGAAATATGTTTCTGTTGTGAGTAGAAGGAAGATAGTTGTGAGAGATTCTTCTGGGTTTCATTGTTTTTCTAATGGCCAATGCTCCTGCAAAGGTTATTGGTGA 2400 39.29 MVIRGSNSLVDRFFDLLRFSGLHGDVDLSRAIHAWSLKLEEDTYLGNALIAAYLRLGFVSDANKSNREQEAIELFLRMRVAGIEPNEYTYVAILTACIRIMNLQLALQVHAIVVKMGYLNCVFVSNALMGAYSNCGELNSVLRLFEELLERDIATWNTVISSLVKEYMYDKAFDYFSEMQHNDGLRIDHFTLSSLMTACAACSSALKGRQLHAHAIKVGLESHLSVGNALIGFYTICGSLNDIMFIFEVMPTKDVITFTELISSYMEFGLLDMAVEVFNKMPERNCISHNAILAGFSKNGEGFRALEFFIEMIKEGTELSAFSLSSVASACGLLGDCEISKQIHGFIIKCGGLSNDYVETALFDMCTKCERMDDAERMFQQHPLDGDGTAKLTSLICGYSRNGQFDKGVSLFHSSRLKGTIFIDEIAASTILGICGSIGFHEMGKQIHCHSLKSGFLSDVGVGNATLCMYSKCSTMEDASRVFNTMSLHDIVSWNGLISGHLLQWQGDEVLAIWKTMENKGIKPDDITFALVISAYKYTYLNLVDHCRSLFLSMKSVYNIQSNSEHYASFVSVLGRWGLLEEAEETIRKMPFEPNVGVWRALLDSCRIHSNAVIGKRVERQILGLKPKDPSSYILLSNLFSAAGRWQSCEMARQDMRKKGIKKLPVQSWIIIDNKIHSFYGRDKSHPQTKDIYRGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFVFYHSVKLAGTYGILMSRGGKPIRIVKNVLLCGDCHEFLKYVSVVSRRKIVVRDSSGFHCFSNGQCSCKGYW 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5874599 5881025 + Bda033495 Bda03g00691 3950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00691 799 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 320 382 - -
Bda03g00691 799 Pfam PPR repeat 256 286 IPR002885 -
Bda03g00691 799 Pfam PPR repeat 393 415 IPR002885 -
Bda03g00691 799 Pfam PPR repeat 288 316 IPR002885 -
Bda03g00691 799 Pfam PPR repeat 567 590 IPR002885 -
Bda03g00691 799 Pfam Pentatricopeptide repeat domain 77 133 IPR002885 -
Bda03g00691 799 PANTHER OS07G0172600 PROTEIN 399 785 - -
Bda03g00691 799 Pfam E motif 609 670 IPR046848 -
Bda03g00691 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 182 IPR002885 -
Bda03g00691 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Bda03g00691 799 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Bda03g00691 799 Gene3D Tetratricopeptide repeat domain 540 680 IPR011990 GO:0005515
Bda03g00691 799 Gene3D Tetratricopeptide repeat domain 208 347 IPR011990 GO:0005515
Bda03g00691 799 PANTHER OS07G0172600 PROTEIN 320 382 - -
Bda03g00691 799 Pfam DYW family of nucleic acid deaminases 707 799 IPR032867 GO:0008270
Bda03g00691 799 PANTHER OS07G0172600 PROTEIN 59 325 - -
Bda03g00691 799 TIGRFAM PPR: pentatricopeptide repeat domain 256 286 IPR002885 -
Bda03g00691 799 TIGRFAM PPR: pentatricopeptide repeat domain 393 415 IPR002885 -
Bda03g00691 799 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Bda03g00691 799 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Bda03g00691 799 TIGRFAM PPR: pentatricopeptide repeat domain 155 187 IPR002885 -
Bda03g00691 799 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 399 785 - -
Bda03g00691 799 Gene3D Tetratricopeptide repeat domain 388 539 IPR011990 GO:0005515
Bda03g00691 799 Gene3D Tetratricopeptide repeat domain 42 207 IPR011990 GO:0005515
Bda03g00691 799 Pfam PPR repeat family 490 536 IPR002885 -
Bda03g00691 799 Pfam PPR repeat family 152 200 IPR002885 -
Bda03g00691 799 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 59 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00691 Bda-Chr3:5874599 Bda08g00065 Bda-Chr8:527492 4.14E-53 dispersed
Bda03g00691 Bda-Chr3:5874599 Bda07g00675 Bda-Chr7:8038499 1.20E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00691 - - qsu:111997141 1070.46