Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00713 ATGGCAGAAGAGCACCGATGCGAAGCGTCTGAGGGCCATCGTCTCTGCGCTAACAACTGTGGCTTCTTCGGCAGTCCAGCGACAATGGACCTTTGCTCCAAATGCTACAGAGACTACCGTCTTAAAGAGCAACAAGAAGCCTCGACCAAATCCACCATCGAAGCTGCTCTCTCAGCCTCCTCATCATCTCCTTCCTCCACTCCGATCGAGACTGTTTCCGATGATTATGTTGCTCCCCCGCTCATAGCCCTACCGGAGATAGCCGAAGATTCGAGAATCGCCTCCGTGGTAGGCGACGGTCCGGAGGGGGAGAGGCAGCCGAAGCGGTGCACAGCGTGCCGAAAACGCGTCGGGTTGACCGGGTTCCGGTGCAGGTGTGGAACCACGTTTTGCGGGGTCCACAGGTACCCGGAGAAGCACGGGTGCCCGTTCGATTTCAAGAAAGTGGGGAAGGAGGAGATAGCTCGTGCTAATCCCCTCGTCAAAGCCGATAAGTTGACCAAGATTTGA 510 56.47 MAEEHRCEASEGHRLCANNCGFFGSPATMDLCSKCYRDYRLKEQQEASTKSTIEAALSASSSSPSSTPIETVSDDYVAPPLIALPEIAEDSRIASVVGDGPEGERQPKRCTACRKRVGLTGFRCRCGTTFCGVHRYPEKHGCPFDFKKVGKEEIARANPLVKADKLTKI 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6051380 6051889 + Bda016697.1 Bda03g00713 3972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00713 169 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Bda03g00713 169 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Bda03g00713 169 ProSiteProfiles Zinc finger AN1-type profile. 104 150 IPR000058 GO:0008270
Bda03g00713 169 PANTHER BNAC06G14100D PROTEIN 1 169 - -
Bda03g00713 169 MobiDBLite consensus disorder prediction 52 71 - -
Bda03g00713 169 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Bda03g00713 169 Pfam AN1-like Zinc finger 110 146 IPR000058 GO:0008270
Bda03g00713 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 59 - -
Bda03g00713 169 Gene3D - 1 69 - -
Bda03g00713 169 SUPERFAMILY AN1-like Zinc finger 102 164 IPR035896 -
Bda03g00713 169 Gene3D - 89 165 IPR035896 -
Bda03g00713 169 SMART AN1_Zf_4 110 147 IPR000058 GO:0008270
Bda03g00713 169 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00327 Bda-Chr1:28581658 Bda03g00713 Bda-Chr3:6051380 9.41E-70 dispersed
Bda02g00709 Bda-Chr2:47932049 Bda03g00713 Bda-Chr3:6051380 1.73E-54 dispersed
Bda03g00713 Bda-Chr3:6051380 Bda09g00307 Bda-Chr9:3843849 2.01E-53 dispersed
Bda06g00058 Bda-Chr6:609793 Bda03g00713 Bda-Chr3:6051380 5.69E-34 dispersed
Bda09g00071 Bda-Chr9:1389021 Bda03g00713 Bda-Chr3:6051380 2.31E-30 dispersed
Bda10g00731 Bda-Chr10:41725265 Bda03g00713 Bda-Chr3:6051380 6.19E-30 dispersed
Bda03g00712 Bda-Chr3:6047819 Bda03g00713 Bda-Chr3:6051380 3.74E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00713 - - csv:101211758 236.884