Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00722 ATGCTGGGTCGAACCTGCATTGTCCTGACTTTGCATCTGATCTCTCTTTCCGAGCTTTCTGCGGCATTATCCTTGAACATCACTCTTCCGGGCCGTCATCCCAACCCAGATGAGGTTGTTCAAGAATTTCACAGGAAAGTAAATGCTTCCATCACCAGAAGGGAAACTTTGCAAATCTCCAAAAACGTGGATTCTTCTTGCTTCACCGGAAACCCCATTGACGACTGCTGGAAATGCGATCCCAACTGGCCCAACGACCGCCAGAGGCTCGCAGATTGCTCTATCGGCTTCGGCCAGTACGCTCTCGGCGGCAAAAATGGCGAGTTTTACATCGTCACAGACGATTCAGATCATGACCCCGTCAATCCGAAACCTGGGACGCTAAGATACGCGGTCATTCAGACGCAGCCTCTGTGGATCGTCTTCCCCAGTAACATGCTTATCAAGCTCTCTCAGGAACTCATCTTCAATAGCTTCAAAACCCTGGATGGCCGGGGAGCTAACGTTCACATTGTCGGCGGTGGGTGCATCACGTTGCAGTATATAAGCAATGTTATTATTCACAATATTCATATCCACCATTGCTATCCTTCTGGTAATACTATGGTCCGGTCGAGCCCAACGCATTTCGGATATAGAACGAAATCTGACGGTGATGGAATCTCCATCTTCGGATCAAGAGACATATGGATAGACCACTGTTCGCTATCGCACTGCAAGGACGGTCTGATCGACGCGATTATGGGGTCCACCGGAATAACGATATCCAACAATTACTTTTCCCACCACGACGAGGTGATGCTGCTCGGCCACAGCGACAGCTACTTGCCGGACTCCGCCATGCAGGTGACGATCGCCTTCAACCACTTCGGCGAGAACCTCGTTCAGCGAATGCCGCGGTGCCGGCGAGGCTACATTCACGTCGTCAACAACGACTTCACGCGGTGGGAAATGTACGCGATCGGCGGGAGCGGAAATCCCACTATCAACAGCCAGGGGAACCGATTCACAGCTCCATACGATCGAAACTCGAAAGAGAGATTTACAAACGAACTAATGTGGGAGCAGGTGACGAAGAGAGTGGACACGGACGAGGCGGAGTGGAGGGGATGGAATTGGAGATCGGAAGGAGATATTTTGGTAAACGGAGCATATTTCGTTACGTCCGGGGAAGGGTTGGAGGTGAAATACGAGAAGGCATACAGCGTTGAACCCAAGTCGGCGTCTCTAATCGATCTCCTAACCTACCATGCCGGGCCACTGGGTGTCGGCGGCCGGGGCAACAATTTGGGAATGTGGAGCACAGGGCTCAACGGTGGAGGAACTGGCTTACAAGGATTTGATGGCCCTGAATACACGGACGACATGTCGGAAAGCAAACGACTGTCAAATCCAGCCCATCACCTCCTATTCATCTTCAATCTAATTTTGTAG 1434 51.32 MLGRTCIVLTLHLISLSELSAALSLNITLPGRHPNPDEVVQEFHRKVNASITRRETLQISKNVDSSCFTGNPIDDCWKCDPNWPNDRQRLADCSIGFGQYALGGKNGEFYIVTDDSDHDPVNPKPGTLRYAVIQTQPLWIVFPSNMLIKLSQELIFNSFKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHFGYRTKSDGDGISIFGSRDIWIDHCSLSHCKDGLIDAIMGSTGITISNNYFSHHDEVMLLGHSDSYLPDSAMQVTIAFNHFGENLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQGNRFTAPYDRNSKERFTNELMWEQVTKRVDTDEAEWRGWNWRSEGDILVNGAYFVTSGEGLEVKYEKAYSVEPKSASLIDLLTYHAGPLGVGGRGNNLGMWSTGLNGGGTGLQGFDGPEYTDDMSESKRLSNPAHHLLFIFNLIL 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6094621 6096422 - Bda016705.1 Bda03g00722 3981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00722 477 Gene3D - 70 422 IPR012334 -
Bda03g00722 477 PANTHER PECTATE LYASE 18-RELATED 1 440 IPR045032 GO:0030570
Bda03g00722 477 SUPERFAMILY Pectin lyase-like 59 405 IPR011050 -
Bda03g00722 477 Pfam Pectate lyase 156 336 IPR002022 -
Bda03g00722 477 PANTHER PECTATE LYASE 12-RELATED 1 440 - -
Bda03g00722 477 SMART amb_all 145 342 IPR002022 -
Bda03g00722 477 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bda03g00722 477 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bda03g00722 477 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bda03g00722 477 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bda03g00722 477 PRINTS Pollen allergen Amb family signature 400 423 IPR018082 -
Bda03g00722 477 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bda03g00722 477 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00722 Bda-Chr3:6094621 Bda14g00785 Bda-Chr14:6062290 0 dispersed
Bda14g00053 Bda-Chr14:450586 Bda03g00722 Bda-Chr3:6094621 0 wgd
Bda14g00368 Bda-Chr14:2672466 Bda03g00722 Bda-Chr3:6094621 3.85E-164 wgd
Bda15g00151 Bda-Chr15:4087033 Bda03g00722 Bda-Chr3:6094621 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00722 K01728 - csv:101203012 759.214