Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00725 ATGGACAGAGAGTGGGGGTCGAAGCCGGGGAGTGGAGGCGCTGCGTCTGCGCAGAATGAAGCAATCGACCGGAGAGAACGGCTCAGAAGGCTGGCTCTTGAGACCATCGACCTCGCAAAAGACCCCTATTTTATGCGTAACCATCTGGGGAGTTACGAGTGTAAGCTTTGTTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCACACACAGGGGAAGCGGCATCAAACTAATTTGGCAAAACGAGCGGCTCGTAAGGCCAAGGATGCTCCTGCTCAGCCCCAGCCTCACAAGCGCAAAGTCTCTGTACGCAGAACAGTTAAAATTGGCAGACCTGGATACAGGGTTACAAAGCAATTCGATCCGGAGACAAAGCAGAGATCTTTACTTTTTCAGATTGAGTATCCTGAAATTGAAGACCTCGCTAAACCAAGACATCGATTTATGTCGTCATACGAGCAGAGAGTTCAACCTTTTGATAAAAGATACCAGTACCTTTTGGTTGCAGCTGAGCCATATGAAATCATTGCTTTCAAGGTTCCTAGCACAGAAATAGAAAAATCAACTCCAAAGTTTTTCTCGAATTGGGATCCAGACTCAAAAATGTTCACGTTGCAATTATACTTCAAAATAGCAAGTGGATATGCTGATGGCTGCATAAGAATTTGGGACTCTGATCAAGGAAACTGTGAAACTACATTAAATGGGCATAAAGGGGCTGTCACTGCGCTTCGGTACAGTAAACTTGGATCCTTGCTTGCGTCTGGGAGCAAAGATAATGATATTATATTGTGGGATGTAGTTGCCGAGAATGGCCTTTTTCGCCTCCGCGGGCATCGTGATCAGGTAACTGATCTTGTTTTTTTAAACTCGGATAAAAAACTTGTAAGCTCCTCCAAAGACAAGTTTTTAAGAGTGTGGGATCTTGAAACCCAGCATTGTGTGCAAATAGTCAGTGGGCATCATAGTGAAATTTGGTCTATAGACACTGATTTAAATGAAAGATATTTGGTTACCGGGTCAGCTGACCATGAACTTCGCTTTTACATGGTTAAAAATGACTTGGTGGATGGGACATCTAAATCTGAAATAAATGGGACTGAAATCAGGAATGAAGCAGATACATCTACTCCAAATAAATGGGAAATTTTGAAGCATTTCGGTGAAATACAGCGACAAACCAAGGATAGAGTTGCTAATTTGAGATTTAACAAGTCTGGAAATTTACTTGCCTGTCAAGTTGCAGGAAAGACTGTAGAAATTTTCCGTGTATTAGATGAAGATGATGCTAAGCGTAAAGCAAAACGTCGTCTTCACCGAAAGAAAGAAAAGAAATCCGGAAAAGAGATACAAGAGCTTTGTGAAAATGGAGATATTGATCAAAGATCTGGAAATAGTCCTCTTATTACAGTCCCAGATGTGTTTAAGCTTCTTCACGTTGTTCGCACCACCAAAAAGATATGTTCTATTTCTTTCTCCCCAGCTACACCAAAGAATTTTCTGGCTACATTAGCATTGTCTTTGAACAATAATTTGCTGGAATTTTATTCTATTGCAAGCAGCGAAACCAAAAAAACTCTTGCTATTGAACTTCAGGGACACCGGTCTGATGTAAGAAGTGTTACACTTAGTTCAGACAACACCCTTTTGATGTCTACAAGTCATAATGCTGTAAAAATATGGAATCCAAGCTCTGGTTCTTGCCTTCGAACCATTGATTCGGGATATGGGCTTTGTGGTTTGATTGTTCCTGATAATAAATATGCACTTGTTGGAACAAAAAGCGGAACTCTTGAAATCATGGATATAAGGAGTGGTACCCACATCGAAGTTGTTGAAGGTCATGGTGGTTCTATTCGATCCATAACGGCCATTCCAAATGAAAATGGATTTGTCACTGGAGGTTCTGATCGTGATATTAAATTTTGGGAGTACCAATTTGGACAAAGATCTGATCAAGGGTCTAAACATCTAGTTGTGTCAAATGTAAGGACTATGAAGATGAATGATGACGTTCTTACTGTTTCTATCAGTCCAGATGCCAAATATATTGCTGTGGCGTTGTTGGATAACACTGTAAAGGTACTCTTTATGGACTCGCTCAAAATATTTCTTTCATTATATGGACACAAGCTACCAGTTTTATGTATGGATATCTCTTCTGATGGAGATTTGATGGTGACTGGCTCTGCGGACAAAAATTTGAAGATATGGGGTCTGGACTTCGGTGACTGTCATAAATCTATTTTTGCGCACTCTGATAGTGTTATGGCTGTGCAATTTGTCCGCAATACTCATTACATGTTTAGTGCTGGAAAGGATCGCCTAGTAAAATACTGGGATGCGGATAAGTTTGAGTTGCTTTTAACTCTTGAAGGACATCATGCTGATATTTGGTGTCTTTCGGTCAGCAATCGGGGTGATTTTCTTGTTACCGGATCTCATGATCGATCTATAAGACGATGGGATCGTACTGAAGAACCATTTTTCATAGAGGAAGAGAAAGAAAAGAGGTTAGAAGAAAAGTTTGAGTCGGACTTTGAAAATGCATTCGAGAACAGATATGCACACAAAGAAGAGGTCCCGGAAGAGGGTGCTGTGGCCTTAGCAGGAAAGAAGACTCAAGAAACACTTACAGCAACTGACTTAATTATTGATGCATTAGATATGGCAGAAGCAGAATTCAAGCGAATAGCTGAACATGAGGAGGAGAAAACAAAGGGAAAAGTTGCTGACCTTCTACCAAATTCTGTAATGCGGGGAGTTTCTCCTTCCGAATATGTTCTTCAGTCACTTTCAAATGTTCATACAAATGATCTGGAGCAAACGTTATTGGCTCTGCCATTTTCAGATGCTTTGAAGCTTGTCTCATACTTGAAGGACTGGACTTCTAAACCTGACAAGGTTGAGCTCATCTGCAGGATGACCACATTTCTGTTACAGACGCATCATAATCAGTTGGTGAGTACGCCAGCTGCAAGACCCATATTGACTGTTCTCAAAGAAATTCTTTATGCTAGAATCAAGGAGTTCAAGGACACTCTTGGTTTCAATCTTGCAGCGATGGAACATTTGAAGCAACTGATGGCTTTGAGGTCTGATGCTCTCTTCCAAGATGCAAAATCAAAGTTGCTTGAAATTCGTTCACAGCATTCGAAACGATTACAAATACGAAGTGATGTAAGAGAGGCAAAAAAGAGGAAAAAGAGCAAGAAAGTATAA 3225 40.87 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAARKAKDAPAQPQPHKRKVSVRRTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLVAAEPYEIIAFKVPSTEIEKSTPKFFSNWDPDSKMFTLQLYFKIASGYADGCIRIWDSDQGNCETTLNGHKGAVTALRYSKLGSLLASGSKDNDIILWDVVAENGLFRLRGHRDQVTDLVFLNSDKKLVSSSKDKFLRVWDLETQHCVQIVSGHHSEIWSIDTDLNERYLVTGSADHELRFYMVKNDLVDGTSKSEINGTEIRNEADTSTPNKWEILKHFGEIQRQTKDRVANLRFNKSGNLLACQVAGKTVEIFRVLDEDDAKRKAKRRLHRKKEKKSGKEIQELCENGDIDQRSGNSPLITVPDVFKLLHVVRTTKKICSISFSPATPKNFLATLALSLNNNLLEFYSIASSETKKTLAIELQGHRSDVRSVTLSSDNTLLMSTSHNAVKIWNPSSGSCLRTIDSGYGLCGLIVPDNKYALVGTKSGTLEIMDIRSGTHIEVVEGHGGSIRSITAIPNENGFVTGGSDRDIKFWEYQFGQRSDQGSKHLVVSNVRTMKMNDDVLTVSISPDAKYIAVALLDNTVKVLFMDSLKIFLSLYGHKLPVLCMDISSDGDLMVTGSADKNLKIWGLDFGDCHKSIFAHSDSVMAVQFVRNTHYMFSAGKDRLVKYWDADKFELLLTLEGHHADIWCLSVSNRGDFLVTGSHDRSIRRWDRTEEPFFIEEEKEKRLEEKFESDFENAFENRYAHKEEVPEEGAVALAGKKTQETLTATDLIIDALDMAEAEFKRIAEHEEEKTKGKVADLLPNSVMRGVSPSEYVLQSLSNVHTNDLEQTLLALPFSDALKLVSYLKDWTSKPDKVELICRMTTFLLQTHHNQLVSTPAARPILTVLKEILYARIKEFKDTLGFNLAAMEHLKQLMALRSDALFQDAKSKLLEIRSQHSKRLQIRSDVREAKKRKKSKKV 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6119252 6128185 + Bda016709.1 Bda03g00725 3984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 792 824 IPR001680 GO:0005515
Bda03g00725 1074 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 176 1073 - -
Bda03g00725 1074 Pfam Dip2/Utp12 Family 926 1027 IPR007148 -
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 268 IPR001680 GO:0005515
Bda03g00725 1074 CDD WD40 528 824 - -
Bda03g00725 1074 Pfam WD domain, G-beta repeat 314 350 IPR001680 GO:0005515
Bda03g00725 1074 Pfam WD domain, G-beta repeat 274 309 IPR001680 GO:0005515
Bda03g00725 1074 Pfam WD domain, G-beta repeat 706 739 IPR001680 GO:0005515
Bda03g00725 1074 Pfam WD domain, G-beta repeat 531 563 IPR001680 GO:0005515
Bda03g00725 1074 Pfam WD domain, G-beta repeat 787 824 IPR001680 GO:0005515
Bda03g00725 1074 Pfam WD domain, G-beta repeat 197 225 IPR001680 GO:0005515
Bda03g00725 1074 Pfam WD domain, G-beta repeat 610 644 IPR001680 GO:0005515
Bda03g00725 1074 Pfam WD domain, G-beta repeat 746 782 IPR001680 GO:0005515
Bda03g00725 1074 Pfam WD domain, G-beta repeat 229 267 IPR001680 GO:0005515
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 708 749 IPR001680 GO:0005515
Bda03g00725 1074 ProSitePatterns Trp-Asp (WD) repeats signature. 296 310 IPR019775 -
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 750 782 - -
Bda03g00725 1074 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 318 IPR001680 GO:0005515
Bda03g00725 1074 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Bda03g00725 1074 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Bda03g00725 1074 PRINTS G protein beta WD-40 repeat signature 727 741 IPR020472 -
Bda03g00725 1074 PANTHER WD REPEAT-CONTAINING PROTEIN 3 176 1073 - -
Bda03g00725 1074 SMART WD40_4 606 645 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 743 782 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 660 698 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 701 740 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 525 563 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 785 824 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 312 351 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 270 309 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 566 603 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 228 267 IPR001680 GO:0005515
Bda03g00725 1074 SMART WD40_4 190 225 IPR001680 GO:0005515
Bda03g00725 1074 Gene3D - 770 842 IPR015943 GO:0005515
Bda03g00725 1074 SMART CactinC_cactus_3 89 217 - -
Bda03g00725 1074 Gene3D - 577 769 IPR015943 GO:0005515
Bda03g00725 1074 Gene3D - 94 216 - -
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 312 - -
Bda03g00725 1074 MobiDBLite consensus disorder prediction 1 21 - -
Bda03g00725 1074 SUPERFAMILY WD40 repeat-like 394 710 IPR036322 GO:0005515
Bda03g00725 1074 Gene3D - 226 389 IPR015943 GO:0005515
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 792 824 - -
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 350 IPR001680 GO:0005515
Bda03g00725 1074 SUPERFAMILY WD40 repeat-like 212 829 IPR036322 GO:0005515
Bda03g00725 1074 Gene3D - 390 576 IPR015943 GO:0005515
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 268 - -
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 791 IPR001680 GO:0005515
Bda03g00725 1074 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Bda03g00725 1074 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 234 IPR001680 GO:0005515
Bda03g00725 1074 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bda03g00725 1074 Pfam Zinc-finger of C2H2 type 52 76 - -
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 654 IPR001680 GO:0005515
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 708 742 - -
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 572 IPR001680 GO:0005515
Bda03g00725 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 613 645 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00320 Bda-Chr1:28392781 Bda03g00725 Bda-Chr3:6119252 2.42E-155 dispersed
Bda03g00725 Bda-Chr3:6119252 Bda03g01341 Bda-Chr3:48032504 8.98E-07 dispersed
Bda03g00725 Bda-Chr3:6119252 Bda01g01520 Bda-Chr1:51061539 1.15E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00725 K14556 - qsu:111997118 1348.57