Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00740 TCTGTGATGGAGACCGTTAAGCTCGACGGATTTAAGAATGGATCATCGGAGAACGGCTCATTGGGAAGCCTGTGCAAGAGCCGCGATCCGTTGAACTGGGGAGCTGCTGCGGAGGCGCTCAAAGGGAGCCATTTGGACGAGGTGAAGCGGATGGTGGCGGAGTATCGCCGGCCGGTGATCAACCTCGGAGGGGAGAGTTTGACCATTGCTCATGTCGCTGCTGTTGCTGGACGGGACTCGGAAGTTTCCGTCGAGCTGTCGGAATCGGCGAGGGCCGGCGTGAAAGCAAGCAGTGACTGGGTGATGGATAGTATGAACCAAGGAACTGATAGCTATGCAGTGACTACTGGGTTTGGTGCAACTTCACACAGAAGAACTAAAGAGGGTGGAGCTCTACAAAAGGAGCTGGTCAGATTCTTGAACGCCGGAATCTTCGGAAACGGAACGGAGTCTTGCCACACATTGCCGCACTCCGCCAGCAGAGCCGCGATGCTCGTAAGAATCAACACCCTCCTCCAGGGCTACTCCGGAATCAGGTTCGACATTCTGGAAGCCATAACCAAACTTCTCAACAGCAACGTTACTCCGTGTTTGCCTCTTCGTGGTACAATCACTGCCTCCGGTGACCTCGTACCCCTATCCTACATCGCCGGGCTACTCACCGGAAGACCCAACTCTAAAGCCGTTGGCCCTAACGGAGAGTCGCTCACTGCTACGGAGGCGTTCGAGCGTGCCGGTATTAAATCCGGGTTTTTCGAGCTGCAGCCGAAGGAAGGGCTGGCATTGGTCAACGGCACCGCCGTGGGATCTGGGTTGGCCTCGGTGGTGCTCTTTGAGGCTAATATTCTCGCTGTGCTGTCGGAGATCCTTTCTGCCATTTTCGTCGAGGTGATGCAGGGGAAGCCGGAGTTTACAGATCATTTGACCCATAAATTGAAGCATCATCCTGGTCAAATTGAAGCCGCCGCCATAATGGAGCACATCTTGGACGGCAGCTCTTACATCAAAGCCGCAAAAAAGCTTCATGAAATGGATCCTCTGCATAAACCGAAACAGGACCGCTACGCTCTTCGAACTTCGCCTCAATGGCTCGGCCCTCTAATCGAAGTGATCCGATTCTCAACAAAATCGATCGAAAGAGAAATCAACTCGGTCAACGATAACCCTCTGATCGATGTTTCTCGCAACAAGGCATTACACGGCGGAAACTTCCAAGGAACTCCAATTGGAGTATCCATGGATAATACCCGTTTAGCCATTGCTTCAATCGGGAAGCTGATATTCGCCCAGTTTTCTGAACTGGTCAATGATTTCTACAACAATGGATTACCCTCGAATCTTTCTGCGGGCAGAAACCCCAGTTTGGATTACGGGTTCAAAGGAGCTGAAATCGCCATGGCTTCGTATTGCTCCGAGCTTCAGTACCTCGCAAATCCAGTAACGAGCCATGTCCAAAGTGCAGAGCAGCACAATCAAGACGTCAACTCTCTCGGCCTAATTTCATCGAGAAAAACAGCTGAAGCTATCGATATTTTGAAATTAATGTCCTCCACCTTCCTGATCGCGCTCTGCCAAGCGATCGATTTGAGGCATTTGGAGGAGAACTTGAAGAACACAGTGAAGAACACAATCAGCCAAGTTGCAAAGAAGGTTCTAACCTCTGCCGGCTTCTGTCGGACCGTCTCCTCTGGTTTTGTCAGAAATGTTGCAGTTTCTTCCGAGTACGACCAGGAAGAGGGGGTTTTCAGCGACGGCGAGGGCTCTGGCTTCACCCCTGAGCTTAAACTCTTTGTGGGAAATCTTCCTTTTAACGTTGATAGTGCTCAGCTAGCCGGGTTGTTTGAAAGCGCTGGAAATGTTGAAATGGTTGAGGTCATTTATGATAAGACGACTGGACGAAGCAGAGGGTTTGGTTTTGTGACCATGTCTACACTTGAAGAAGTTGAAGCAGCTGCTCAACAATTCAATGGCTATGAATTGGATGGCAGAGCATTGAGGGTGAATTATGGACCTCCTCCTATTCAGTCACGGAGAGAGGAGTCCTCTTTTAGAGGGGGCCGAGGTGGTGGTGGAGGAGGTTTTGATAACTCTAACCGTGTCTATGTCGGAAACCTTGCATGGGGTGTTGATAATTTGGCGCTGGAGACATTGTTTAGTGGGCATGGAAAGGTTTTGGATGCCAAAGTTGTTTATGACCGGGACAGTGGAAGATCAAGGGGATTTGGCTTTGTAACCTATAGTTCTGCGGACGAAGTGGACAGTGCTATTGAGTCCTTGAATGGTGTTGACTTGAATGGTCGAGCAATCCGTGTTACTGTTGCTGAATCAAAGCCTAGGCGTCAGTTTTGA 2349 50.36 SVMETVKLDGFKNGSSENGSLGSLCKSRDPLNWGAAAEALKGSHLDEVKRMVAEYRRPVINLGGESLTIAHVAAVAGRDSEVSVELSESARAGVKASSDWVMDSMNQGTDSYAVTTGFGATSHRRTKEGGALQKELVRFLNAGIFGNGTESCHTLPHSASRAAMLVRINTLLQGYSGIRFDILEAITKLLNSNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLTATEAFERAGIKSGFFELQPKEGLALVNGTAVGSGLASVVLFEANILAVLSEILSAIFVEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEMDPLHKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTISQVAKKVLTSAGFCRTVSSGFVRNVAVSSEYDQEEGVFSDGEGSGFTPELKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKTTGRSRGFGFVTMSTLEEVEAAAQQFNGYELDGRALRVNYGPPPIQSRREESSFRGGRGGGGGGFDNSNRVYVGNLAWGVDNLALETLFSGHGKVLDAKVVYDRDSGRSRGFGFVTYSSADEVDSAIESLNGVDLNGRAIRVTVAESKPRRQF 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6281911 6290638 + Bda016725.1 Bda03g00740 3999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00740 782 CDD RRM_HP0827_like 595 668 - -
Bda03g00740 782 Gene3D Fumarase/aspartase (Central domain) 267 532 - -
Bda03g00740 782 Gene3D - 696 782 IPR012677 -
Bda03g00740 782 Gene3D - 590 695 IPR012677 -
Bda03g00740 782 Gene3D - 22 266 IPR024083 -
Bda03g00740 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 596 666 IPR000504 GO:0003723
Bda03g00740 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 700 770 IPR000504 GO:0003723
Bda03g00740 782 Pfam Aromatic amino acid lyase 67 542 IPR001106 -
Bda03g00740 782 CDD RRM_HP0827_like 699 775 - -
Bda03g00740 782 Gene3D - 533 556 IPR023144 -
Bda03g00740 782 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 29 578 IPR005922 GO:0005737|GO:0006559|GO:0016841
Bda03g00740 782 SMART rrm1_1 595 668 IPR000504 GO:0003723
Bda03g00740 782 SMART rrm1_1 699 772 IPR000504 GO:0003723
Bda03g00740 782 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 25 557 - -
Bda03g00740 782 CDD PAL-HAL 65 530 IPR001106 -
Bda03g00740 782 PANTHER HISTIDINE AMMONIA-LYASE 25 557 IPR001106 -
Bda03g00740 782 SUPERFAMILY RNA-binding domain, RBD 695 781 IPR035979 GO:0003676
Bda03g00740 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 594 672 IPR000504 GO:0003723
Bda03g00740 782 SUPERFAMILY RNA-binding domain, RBD 592 696 IPR035979 GO:0003676
Bda03g00740 782 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 202 218 IPR022313 GO:0016841
Bda03g00740 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 698 776 IPR000504 GO:0003723
Bda03g00740 782 SUPERFAMILY L-aspartase-like 29 554 IPR008948 GO:0003824
Bda03g00740 782 MobiDBLite consensus disorder prediction 670 691 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00740 Bda-Chr3:6281911 Bda15g00163 Bda-Chr15:4189266 0 dispersed
Bda11g00780 Bda-Chr11:7799303 Bda03g00740 Bda-Chr3:6281911 3.28E-06 dispersed
Bda03g00739 Bda-Chr3:6273362 Bda03g00740 Bda-Chr3:6281911 0 tandem
Bda05g01125 Bda-Chr5:59483911 Bda03g00740 Bda-Chr3:6281911 1.32E-11 transposed
Bda06g00624 Bda-Chr6:8531279 Bda03g00740 Bda-Chr3:6281911 2.39E-15 transposed
Bda01g00296 Bda-Chr1:27841289 Bda03g00740 Bda-Chr3:6281911 8.89E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00740 K10775 - csv:101218617 962.985