Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00740 | TCTGTGATGGAGACCGTTAAGCTCGACGGATTTAAGAATGGATCATCGGAGAACGGCTCATTGGGAAGCCTGTGCAAGAGCCGCGATCCGTTGAACTGGGGAGCTGCTGCGGAGGCGCTCAAAGGGAGCCATTTGGACGAGGTGAAGCGGATGGTGGCGGAGTATCGCCGGCCGGTGATCAACCTCGGAGGGGAGAGTTTGACCATTGCTCATGTCGCTGCTGTTGCTGGACGGGACTCGGAAGTTTCCGTCGAGCTGTCGGAATCGGCGAGGGCCGGCGTGAAAGCAAGCAGTGACTGGGTGATGGATAGTATGAACCAAGGAACTGATAGCTATGCAGTGACTACTGGGTTTGGTGCAACTTCACACAGAAGAACTAAAGAGGGTGGAGCTCTACAAAAGGAGCTGGTCAGATTCTTGAACGCCGGAATCTTCGGAAACGGAACGGAGTCTTGCCACACATTGCCGCACTCCGCCAGCAGAGCCGCGATGCTCGTAAGAATCAACACCCTCCTCCAGGGCTACTCCGGAATCAGGTTCGACATTCTGGAAGCCATAACCAAACTTCTCAACAGCAACGTTACTCCGTGTTTGCCTCTTCGTGGTACAATCACTGCCTCCGGTGACCTCGTACCCCTATCCTACATCGCCGGGCTACTCACCGGAAGACCCAACTCTAAAGCCGTTGGCCCTAACGGAGAGTCGCTCACTGCTACGGAGGCGTTCGAGCGTGCCGGTATTAAATCCGGGTTTTTCGAGCTGCAGCCGAAGGAAGGGCTGGCATTGGTCAACGGCACCGCCGTGGGATCTGGGTTGGCCTCGGTGGTGCTCTTTGAGGCTAATATTCTCGCTGTGCTGTCGGAGATCCTTTCTGCCATTTTCGTCGAGGTGATGCAGGGGAAGCCGGAGTTTACAGATCATTTGACCCATAAATTGAAGCATCATCCTGGTCAAATTGAAGCCGCCGCCATAATGGAGCACATCTTGGACGGCAGCTCTTACATCAAAGCCGCAAAAAAGCTTCATGAAATGGATCCTCTGCATAAACCGAAACAGGACCGCTACGCTCTTCGAACTTCGCCTCAATGGCTCGGCCCTCTAATCGAAGTGATCCGATTCTCAACAAAATCGATCGAAAGAGAAATCAACTCGGTCAACGATAACCCTCTGATCGATGTTTCTCGCAACAAGGCATTACACGGCGGAAACTTCCAAGGAACTCCAATTGGAGTATCCATGGATAATACCCGTTTAGCCATTGCTTCAATCGGGAAGCTGATATTCGCCCAGTTTTCTGAACTGGTCAATGATTTCTACAACAATGGATTACCCTCGAATCTTTCTGCGGGCAGAAACCCCAGTTTGGATTACGGGTTCAAAGGAGCTGAAATCGCCATGGCTTCGTATTGCTCCGAGCTTCAGTACCTCGCAAATCCAGTAACGAGCCATGTCCAAAGTGCAGAGCAGCACAATCAAGACGTCAACTCTCTCGGCCTAATTTCATCGAGAAAAACAGCTGAAGCTATCGATATTTTGAAATTAATGTCCTCCACCTTCCTGATCGCGCTCTGCCAAGCGATCGATTTGAGGCATTTGGAGGAGAACTTGAAGAACACAGTGAAGAACACAATCAGCCAAGTTGCAAAGAAGGTTCTAACCTCTGCCGGCTTCTGTCGGACCGTCTCCTCTGGTTTTGTCAGAAATGTTGCAGTTTCTTCCGAGTACGACCAGGAAGAGGGGGTTTTCAGCGACGGCGAGGGCTCTGGCTTCACCCCTGAGCTTAAACTCTTTGTGGGAAATCTTCCTTTTAACGTTGATAGTGCTCAGCTAGCCGGGTTGTTTGAAAGCGCTGGAAATGTTGAAATGGTTGAGGTCATTTATGATAAGACGACTGGACGAAGCAGAGGGTTTGGTTTTGTGACCATGTCTACACTTGAAGAAGTTGAAGCAGCTGCTCAACAATTCAATGGCTATGAATTGGATGGCAGAGCATTGAGGGTGAATTATGGACCTCCTCCTATTCAGTCACGGAGAGAGGAGTCCTCTTTTAGAGGGGGCCGAGGTGGTGGTGGAGGAGGTTTTGATAACTCTAACCGTGTCTATGTCGGAAACCTTGCATGGGGTGTTGATAATTTGGCGCTGGAGACATTGTTTAGTGGGCATGGAAAGGTTTTGGATGCCAAAGTTGTTTATGACCGGGACAGTGGAAGATCAAGGGGATTTGGCTTTGTAACCTATAGTTCTGCGGACGAAGTGGACAGTGCTATTGAGTCCTTGAATGGTGTTGACTTGAATGGTCGAGCAATCCGTGTTACTGTTGCTGAATCAAAGCCTAGGCGTCAGTTTTGA | 2349 | 50.36 | SVMETVKLDGFKNGSSENGSLGSLCKSRDPLNWGAAAEALKGSHLDEVKRMVAEYRRPVINLGGESLTIAHVAAVAGRDSEVSVELSESARAGVKASSDWVMDSMNQGTDSYAVTTGFGATSHRRTKEGGALQKELVRFLNAGIFGNGTESCHTLPHSASRAAMLVRINTLLQGYSGIRFDILEAITKLLNSNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLTATEAFERAGIKSGFFELQPKEGLALVNGTAVGSGLASVVLFEANILAVLSEILSAIFVEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEMDPLHKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTISQVAKKVLTSAGFCRTVSSGFVRNVAVSSEYDQEEGVFSDGEGSGFTPELKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKTTGRSRGFGFVTMSTLEEVEAAAQQFNGYELDGRALRVNYGPPPIQSRREESSFRGGRGGGGGGFDNSNRVYVGNLAWGVDNLALETLFSGHGKVLDAKVVYDRDSGRSRGFGFVTYSSADEVDSAIESLNGVDLNGRAIRVTVAESKPRRQF | 782 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6281911 | 6290638 | + | Bda016725.1 | Bda03g00740 | 3999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00740 | 782 | CDD | RRM_HP0827_like | 595 | 668 | - | - | |
Bda03g00740 | 782 | Gene3D | Fumarase/aspartase (Central domain) | 267 | 532 | - | - | |
Bda03g00740 | 782 | Gene3D | - | 696 | 782 | IPR012677 | - | |
Bda03g00740 | 782 | Gene3D | - | 590 | 695 | IPR012677 | - | |
Bda03g00740 | 782 | Gene3D | - | 22 | 266 | IPR024083 | - | |
Bda03g00740 | 782 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 596 | 666 | IPR000504 | GO:0003723 | |
Bda03g00740 | 782 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 700 | 770 | IPR000504 | GO:0003723 | |
Bda03g00740 | 782 | Pfam | Aromatic amino acid lyase | 67 | 542 | IPR001106 | - | |
Bda03g00740 | 782 | CDD | RRM_HP0827_like | 699 | 775 | - | - | |
Bda03g00740 | 782 | Gene3D | - | 533 | 556 | IPR023144 | - | |
Bda03g00740 | 782 | TIGRFAM | phe_am_lyase: phenylalanine ammonia-lyase | 29 | 578 | IPR005922 | GO:0005737|GO:0006559|GO:0016841 | |
Bda03g00740 | 782 | SMART | rrm1_1 | 595 | 668 | IPR000504 | GO:0003723 | |
Bda03g00740 | 782 | SMART | rrm1_1 | 699 | 772 | IPR000504 | GO:0003723 | |
Bda03g00740 | 782 | PANTHER | PHENYLALANINE AMMONIA-LYASE 1-LIKE | 25 | 557 | - | - | |
Bda03g00740 | 782 | CDD | PAL-HAL | 65 | 530 | IPR001106 | - | |
Bda03g00740 | 782 | PANTHER | HISTIDINE AMMONIA-LYASE | 25 | 557 | IPR001106 | - | |
Bda03g00740 | 782 | SUPERFAMILY | RNA-binding domain, RBD | 695 | 781 | IPR035979 | GO:0003676 | |
Bda03g00740 | 782 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 594 | 672 | IPR000504 | GO:0003723 | |
Bda03g00740 | 782 | SUPERFAMILY | RNA-binding domain, RBD | 592 | 696 | IPR035979 | GO:0003676 | |
Bda03g00740 | 782 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 202 | 218 | IPR022313 | GO:0016841 | |
Bda03g00740 | 782 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 698 | 776 | IPR000504 | GO:0003723 | |
Bda03g00740 | 782 | SUPERFAMILY | L-aspartase-like | 29 | 554 | IPR008948 | GO:0003824 | |
Bda03g00740 | 782 | MobiDBLite | consensus disorder prediction | 670 | 691 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00740 | Bda-Chr3:6281911 | Bda15g00163 | Bda-Chr15:4189266 | 0 | dispersed | |
Bda11g00780 | Bda-Chr11:7799303 | Bda03g00740 | Bda-Chr3:6281911 | 3.28E-06 | dispersed | |
Bda03g00739 | Bda-Chr3:6273362 | Bda03g00740 | Bda-Chr3:6281911 | 0 | tandem | |
Bda05g01125 | Bda-Chr5:59483911 | Bda03g00740 | Bda-Chr3:6281911 | 1.32E-11 | transposed | |
Bda06g00624 | Bda-Chr6:8531279 | Bda03g00740 | Bda-Chr3:6281911 | 2.39E-15 | transposed | |
Bda01g00296 | Bda-Chr1:27841289 | Bda03g00740 | Bda-Chr3:6281911 | 8.89E-14 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00740 | K10775 | - | csv:101218617 | 962.985 |