Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00757 ATGAGCCTCAATGGTGATCATTATAAAGAATTTCAAGAACAGAATTTCATTCTGCAAGATGAAGAAAAGGGGGTTATTTGTAAAGTTACTTGCAAGAAACAAAGACTGCCGGAGAATTATAAGTTGAAAAACAACGCAATAGTGAATGATGTACAAGATAGGAAAGGAAAGGCTGTTCAACTCTGGGATGTTATACCAGAAAGGCAGCTGCAGCCTCAAGAATCAATGGTTTGTTGGGAGAGATTTCTACATCTTAGATCCCTCAAGGTTTTGCTTGTTGAAATTGATGATTCAACTCGTCATATTGTCAGTGCACTGCTTCGCAATTGCAGTTATGAAGTTATTGAGGCTCCAAATGGATTACAAGCATGGAAGATACTAGAAGATCTAAGTAATCATATTGATCTTATCCTCACGGAGGTGGTAATGCCTTGCTTTTCTGGGATTGGATTATTATGCAAGATTATGAACCATAAAACAAGAAACAATATTCCTGTGATTATGATGTCATCTCATGATTCAATGGGCTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCGTGAGAAAGAATGAGCTTAAAATTCTTTGGCAGCATGTTTGGAGAAGATGCCACGCTTCCAGCGGCAGTGGGAGTGAAAGTGGCATACAGACTCAAAAGTCTGTGAAGTCAAAAAGCATTAGAAATACAGGAAACAATACTGGCAGCGACGATGGAGAAGACAACAAGACTAATTTGAATATTGAAGATGATAGTGGGAATGGGAGTGGCACTCAGGGCTCTTGGACCAAACAAATCGTAGAAGTTGAAAGCTCAAGAGATGTGTCTGAGTGTGCAGATAGTACTTGCGCTCAAGTTGTACGCTCAAACGAAAAAGCATTTGGTGATAATGTTCCCCTTCCTCCAACAAGGGAGTTCCAGGAACAGAACAACCGACAGGATAGTGTTGCCATGTTTGACGAGGGCATGACTATCCCGCCAAAGAATCTAGATTTCGGGCTTGACCTCTCAAATGAGGTTTCAATCAAACATGTCTCTGTAAAACAAAAGAACACTGTTCTTGAGATGGGAATCAACAAATTCAACGAGCAGTTGAATAATGGACTTTTGAAACTGAATTCTGGAAGTACCACTAACAAGATAAAGTGTGAAGATGTCGCTCTGAAAGGTCTAACTAGTGATATCATTGATCCTCATGTGGATAACTCAGTGTCTACTGCTCCCAACGAACATCTAAAAATTTCAGATATCATGGGTAAATCTGCATCAGATTCAGATGGACCATCACCAGAGCTTAGTTTAAAGAGACTAAGAGGAGCTGAAGACTATCAAAATGTCACGAGACGTTTAGAGTCCACGTCTTTTTCCAGGTACAACGCAGCCTCAAATTTTAACCAGGCTCTTACTGTGCAAGTGGAAAGCAGTTCTCCATGCGAAATCTCACCTGATACTCAATCAAATTCAAGTGGAAATCCTCCAAATCAAAGCTCGAATGGGGATAGTAATAACGTTGATATGGGTTCTATTACTAATAACGCATTCACCAAGTCAAATACCATGAATAAATACTCAGTGGTGGCGCTGACAGTCCATGGTTTACAAGTATCACCCGAGAGCAAGTTCATGAAAGAAGACAAAATATCAACACCTGAGCAAATTTTACTGGACAATTGTGATGACATGGCAAGTGCGACAGTGCAAGCTCAGCCAAAGGATATTAAAAGCCTCTGTGATTCGCATGTTCGTCATCTTCTCCATCAACAAACATTACCCAGTGAGCACGGAGATTTGTCATTGAAGAAAATGGCTGTTACTCTTACCCACTGTGGGTCATCCAATTTAGACGGACGCATAGAAGGCAATGCTTCAAACTTTAGTGTTGATAGAAGTGGTTCAAGGAGTAACCCTGACAGCAATGGACAAAATGGTAAGATTCGTCCGAAGAGAAAGCAAGGTGCACCCGGAAAGAGGTTCATTATCAGAAAAGAAAGAGACTCATAG 2019 40.47 MSLNGDHYKEFQEQNFILQDEEKGVICKVTCKKQRLPENYKLKNNAIVNDVQDRKGKAVQLWDVIPERQLQPQESMVCWERFLHLRSLKVLLVEIDDSTRHIVSALLRNCSYEVIEAPNGLQAWKILEDLSNHIDLILTEVVMPCFSGIGLLCKIMNHKTRNNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPVRKNELKILWQHVWRRCHASSGSGSESGIQTQKSVKSKSIRNTGNNTGSDDGEDNKTNLNIEDDSGNGSGTQGSWTKQIVEVESSRDVSECADSTCAQVVRSNEKAFGDNVPLPPTREFQEQNNRQDSVAMFDEGMTIPPKNLDFGLDLSNEVSIKHVSVKQKNTVLEMGINKFNEQLNNGLLKLNSGSTTNKIKCEDVALKGLTSDIIDPHVDNSVSTAPNEHLKISDIMGKSASDSDGPSPELSLKRLRGAEDYQNVTRRLESTSFSRYNAASNFNQALTVQVESSSPCEISPDTQSNSSGNPPNQSSNGDSNNVDMGSITNNAFTKSNTMNKYSVVALTVHGLQVSPESKFMKEDKISTPEQILLDNCDDMASATVQAQPKDIKSLCDSHVRHLLHQQTLPSEHGDLSLKKMAVTLTHCGSSNLDGRIEGNASNFSVDRSGSRSNPDSNGQNGKIRPKRKQGAPGKRFIIRKERDS 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6371996 6377197 + Bda016742.1 Bda03g00757 4016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00757 672 MobiDBLite consensus disorder prediction 619 672 - -
Bda03g00757 672 MobiDBLite consensus disorder prediction 212 267 - -
Bda03g00757 672 MobiDBLite consensus disorder prediction 212 247 - -
Bda03g00757 672 Gene3D - 87 238 - -
Bda03g00757 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 39 658 IPR045279 GO:0009736
Bda03g00757 672 Pfam Response regulator receiver domain 90 200 IPR001789 GO:0000160
Bda03g00757 672 SUPERFAMILY CheY-like 86 213 IPR011006 -
Bda03g00757 672 CDD psREC_PRR 90 193 - -
Bda03g00757 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 39 658 - -
Bda03g00757 672 MobiDBLite consensus disorder prediction 619 648 - -
Bda03g00757 672 ProSiteProfiles Response regulatory domain profile. 89 207 IPR001789 GO:0000160
Bda03g00757 672 MobiDBLite consensus disorder prediction 480 516 - -
Bda03g00757 672 SMART REC_2 88 203 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00757 K12129 PRR7; pseudo-response regulator 7 - csv:101210765 621.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00757 Bda-Chr3:6371996 Bda07g01959 Bda-Chr7:36961945 1.44E-50 dispersed
Bda14g00095 Bda-Chr14:684443 Bda03g00757 Bda-Chr3:6371996 1.96E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda07g01573 . 1 163 Response Regulator Gene Family AT1G59940 66.5 1.3e-55 213.8
Bda10g01007 . 1 164 Response Regulator Gene Family AT1G59940 66.7 4.8e-55 211.8
Bda11g01678 . 1 150 Response Regulator Gene Family AT1G59940 67.5 3.0e-49 192.6
Bda14g00828 . 15 152 Response Regulator Gene Family AT1G59940 64.0 6.7e-41 164.9
Bda15g00091 . 8 149 Response Regulator Gene Family AT1G59940 58.5 1.4e-38 157.1
Bda07g01573 . 19 192 Response Regulator Gene Family AT1G10470 63.4 1.4e-54 209.9
Bda10g01007 . 28 190 Response Regulator Gene Family AT1G10470 67.5 4.5e-53 204.9
Bda11g01678 . 15 172 Response Regulator Gene Family AT1G10470 65.4 2.3e-49 192.6
Bda14g00828 . 15 168 Response Regulator Gene Family AT1G10470 60.6 1.8e-41 166.4
Bda15g00091 . 10 171 Response Regulator Gene Family AT1G10470 53.1 5.8e-37 151.4
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda11g01678 . 16 172 Response Regulator Gene Family AT5G62920 71.1 2.6e-53 205.3
Bda07g01573 . 30 160 Response Regulator Gene Family AT5G62920 71.8 4.3e-48 188.0
Bda10g01007 . 30 159 Response Regulator Gene Family AT5G62920 74.6 2.8e-47 185.3
Bda14g00828 . 24 174 Response Regulator Gene Family AT5G62920 65.8 2.6e-45 178.7
Bda15g00091 . 10 152 Response Regulator Gene Family AT5G62920 55.2 2.4e-38 155.6
Bda11g01678 . 5 172 Response Regulator Gene Family AT1G19050 65.3 9.2e-52 200.3
Bda10g01007 . 26 189 Response Regulator Gene Family AT1G19050 60.0 1.4e-44 176.4
Bda07g01573 . 31 205 Response Regulator Gene Family AT1G19050 56.0 2.4e-44 175.6
Bda14g00828 . 23 160 Response Regulator Gene Family AT1G19050 69.1 2.7e-43 172.2
Bda15g00091 . 8 154 Response Regulator Gene Family AT1G19050 53.7 6.4e-37 151.0
Bda15g00091 . 1 149 Response Regulator Gene Family AT2G41310 60.9 2.4e-45 179.1
Bda07g01573 . 33 166 Response Regulator Gene Family AT2G41310 58.2 2.8e-41 165.6
Bda10g01007 . 33 170 Response Regulator Gene Family AT2G41310 58.6 3.0e-40 162.2
Bda11g01678 . 19 147 Response Regulator Gene Family AT2G41310 59.4 7.5e-39 157.5
Bda15g00091 . 1 176 Response Regulator Gene Family AT3G57040 54.5 7.5e-50 194.1
Bda07g01573 . 31 167 Response Regulator Gene Family AT3G57040 58.2 1.8e-43 172.9
Bda10g01007 . 31 161 Response Regulator Gene Family AT3G57040 60.7 7.5e-42 167.5
Bda11g01678 . 23 147 Response Regulator Gene Family AT3G57040 61.0 4.1e-40 161.8
Bda14g00441 . 1 144 Response Regulator Gene Family AT3G57040 55.3 9.5e-37 150.6
Bda11g01678 . 21 172 Response Regulator Gene Family AT1G74890 67.5 4.6e-51 198.0
Bda10g01007 . 23 163 Response Regulator Gene Family AT1G74890 68.1 9.9e-46 180.3
Bda07g01573 . 25 162 Response Regulator Gene Family AT1G74890 66.7 1.3e-45 179.9
Bda14g00828 . 21 174 Response Regulator Gene Family AT1G74890 63.5 1.9e-44 176.0
Bda15g00091 . 4 154 Response Regulator Gene Family AT1G74890 53.0 3.1e-39 158.7
Bda10g01007 . 30 161 Response Regulator Gene Family AT2G40670 62.2 8.5e-40 160.2
Bda07g01573 . 30 157 Response Regulator Gene Family AT2G40670 61.1 1.1e-39 159.8
Bda11g01678 . 23 147 Response Regulator Gene Family AT2G40670 61.8 1.4e-37 152.9
Bda07g01573 . 16 157 Response Regulator Gene Family AT3G56380 57.7 5.0e-42 167.5
Bda10g01007 . 22 161 Response Regulator Gene Family AT3G56380 61.0 5.0e-42 167.5
Bda11g01678 . 16 147 Response Regulator Gene Family AT3G56380 59.0 1.1e-38 156.4
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda03g00757 . 65 297 Response Regulator Gene Family AT5G60100 58.7 6.3e-68 255.0
Bda14g00095 . 41 303 Response Regulator Gene Family AT5G60100 54.4 7.2e-64 241.5
Bda08g00081 . 24 157 Response Regulator Gene Family AT5G60100 61.9 1.1e-43 174.5
Bda14g00095 . 175 316 Response Regulator Gene Family AT5G02810 59.1 2.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002590 2 9 3 3 2 1 4 1 1 1 1 1 2 1 1 2 1 5 1 1 1 1 1 1 1 1 1 5 1 3 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15694 PF00072 Response_reg 1.00E-18 CL0304 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00757 Bda_Chr03 FPKM 64.411407 67.526749 75.542458 73.922142 71.129135 83.463181 70.989014 111.100212 104.815742