Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00767 ATGGGTAATGCCCATCGTCACCGTAAACACGGTAACAACTCGCTCTTCCCGCCCTTTAAATATGGCGAATCAGATCATACAGCTCAGTCTCCCAGCTCATCTACCGGCAACTGCAGCGGCAATATGGTAGCCTTGCCTTACACTCTCGCCGACTCCAGCTTGCGAGCCCTAGCCGGGCAGGCGGAAGGTTTTGGGCGGTTAGCCATCGGTGGTTTACACGGTCCTCTTTATCATGTCACCACATTAGCAGATGATGGGCCGGGATCTTTACGCTACGGATGCAGGAAGAAAGAACCGTTATGGATTGTCTTTGAAATTTCAGGCACTATTAACCTCTCATCTTTCTTGAGTTTATCATCTTATAAGACCATCGATGGACGCGGCCAAAGGATAAAACTCACTGGGAAGGGTTTGAGGATTAAGGAATGTGAACATGTGATTATTTGCAATCTAGAGTTTGAAGGCGGGAAAGGTCCTGATGTTGATGCTATTCAAATTAAACCGAATTCTAAGCACATATGGATAGACCGTTGCAGCCTCAGTGGATATGCTGATGGACTGATCGATATCACCCGAGAAAGCACAGATATTACTGTTTCTAGGTGTCACTTTTCACAGCATGACAAAACGATGCTGATTGGAGCTGATCCGTCTCATGTTAGTGATCGATGTATAAGGGTGACGATTCATCATTGTTTTTTCGATGGGTGTCGCCAAAGGCATCCTCGTGTGAGATTTGCCAAAGTACACTTATACAATAATTACACGAGAAATTGGGGCATCTATGCAGTTTGTGCCAGTGTAGAATCTCAGATATACTCTCAATGTAACATCTATGAAGCAGGACAAAAGAAGGTGGCATTTAAGTATCTCACTGAGAAGGCCGCAGACAAGGAGGAGGCAACAAGTGGCGTCATAAAGTCGGAGGGCGACTTGTTTATTACCAGTACTGAAGCGGGTTTAATGAAAGAAAATCATGACTGTTCCGTCTTTCATCCAACTCAGCATTACTCTAAATGGACGGTTGAACGGCCGAGTGAAGCTCTGAAGCAGATTCTCCAACGTACTTCCGGTTGGCAAAATATTCCTCTGCCTCTTGATCAATCAACTGGCCACACAAAATAG 1125 45.33 MGNAHRHRKHGNNSLFPPFKYGESDHTAQSPSSSTGNCSGNMVALPYTLADSSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRYGCRKKEPLWIVFEISGTINLSSFLSLSSYKTIDGRGQRIKLTGKGLRIKECEHVIICNLEFEGGKGPDVDAIQIKPNSKHIWIDRCSLSGYADGLIDITRESTDITVSRCHFSQHDKTMLIGADPSHVSDRCIRVTIHHCFFDGCRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEKAADKEEATSGVIKSEGDLFITSTEAGLMKENHDCSVFHPTQHYSKWTVERPSEALKQILQRTSGWQNIPLPLDQSTGHTK 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6430415 6433110 + Bda016752.1 Bda03g00767 4026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00767 374 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Bda03g00767 374 PRINTS Pollen allergen Amb family signature 262 281 IPR018082 -
Bda03g00767 374 PRINTS Pollen allergen Amb family signature 60 77 IPR018082 -
Bda03g00767 374 PANTHER PECTATE LYASE 40 365 - -
Bda03g00767 374 SUPERFAMILY Pectin lyase-like 58 365 IPR011050 -
Bda03g00767 374 MobiDBLite consensus disorder prediction 1 37 - -
Bda03g00767 374 Pfam Pectate lyase 117 278 IPR002022 -
Bda03g00767 374 Gene3D - 47 358 IPR012334 -
Bda03g00767 374 PANTHER PECTATE LYASE 18-RELATED 40 365 IPR045032 GO:0030570
Bda03g00767 374 SMART amb_all 87 285 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00767 Bda-Chr3:6430415 Bda14g00053 Bda-Chr14:450586 9.54E-43 dispersed
Bda03g00767 Bda-Chr3:6430415 Bda13g01679 Bda-Chr13:40172820 1.90E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00767 K01728 - qsu:112025472 603.594