Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00784 ATGGGCGCCGCGACTTTGCTCTGCTCTGTTTCACTAGTGTTGCTGTTGGCGGTGGTCGATGCTAGAATCCCCGGAGTTTACTCCGGTGGTGCATGGGAGGGCGCACACGCTACTTTCTACGGCGGTAGCGACGCCTCCGGAACAATGGGCGGTGCTTGTGGGTATGGAAATCTGTACAGCCAAGGCTACGGAGTAAACACGGCGGCACTGAGCACTGCTCTGTTCAACAGCGGGCTCAGTTGCGGTGCCTGCTTTGAGATTAAGTGCGCCGACGACCCAAAATGGTGTCATCCTGGTAATCCTTCCATCTTCATCACCGCCACCAATTTCTGCCCTCCAAACTTCGCCCTACCTAACGACAATGGCGGCTGGTGCAACCCTCCCCGTCCCCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATTGCCGAGTACCGAGCAGGAATAGTCCCTGTTTCCTTCCGCCGGGTGGCATGCAGAAAGGCGGGGGGAATCAGGTTCACGATCAACGGCTTCCGTTACTTCAACCTGGTTCTGATCACAAACGTCGCGGGTGCAGGTGATATCGTGCGCGTTAGCGTCAAGGGCGGAAACACTGGATGGATGAGCATGAGCCGGAACTGGGGGCAAAACTGGCAATCTAATTCCGCCTTGGTGGGCCAAACTCTCTCCTTTAGAGTCACGGGTAGTGACGGACGCACCTCTACGTCATGGAACGTGGCGCCGTCCAATTGGAAGTTCGGTCAGACTTTCAGCGGGAAGAATTTCCGCGTC 774 56.46 MGAATLLCSVSLVLLLAVVDARIPGVYSGGAWEGAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCADDPKWCHPGNPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVACRKAGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGGNTGWMSMSRNWGQNWQSNSALVGQTLSFRVTGSDGRTSTSWNVAPSNWKFGQTFSGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6554733 6555979 - Bda033497 Bda03g00784 4043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00784 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Bda03g00784 258 Gene3D - 164 256 IPR036749 -
Bda03g00784 258 Gene3D - 18 160 IPR036908 -
Bda03g00784 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Bda03g00784 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Bda03g00784 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Bda03g00784 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Bda03g00784 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Bda03g00784 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Bda03g00784 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Bda03g00784 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Bda03g00784 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Bda03g00784 258 SUPERFAMILY PHL pollen allergen 162 252 IPR036749 -
Bda03g00784 258 SMART dpbb_1 67 154 IPR007112 -
Bda03g00784 258 PANTHER EXPANSIN 4 257 - -
Bda03g00784 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Bda03g00784 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Bda03g00784 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Bda03g00784 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Bda03g00784 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Bda03g00784 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Bda03g00784 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Bda03g00784 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Bda03g00784 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Bda03g00784 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Bda03g00784 258 PANTHER EXPANSIN-A15 4 257 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00784 Bda05g00964 CCT
Bda03g00784 Bda05g00964 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00784 Bda-Chr3:6554733 Bda15g00354 Bda-Chr15:6419088 1.43E-152 dispersed
Bda01g00226 Bda-Chr1:26088656 Bda03g00784 Bda-Chr3:6554733 1.24E-131 wgd
Bda15g00228 Bda-Chr15:4971370 Bda03g00784 Bda-Chr3:6554733 6.47E-159 wgd
Bda15g00345 Bda-Chr15:6303251 Bda03g00784 Bda-Chr3:6554733 1.05E-148 wgd
Bda02g00824 Bda-Chr2:48835106 Bda03g00784 Bda-Chr3:6554733 1.13E-159 wgd
Bda03g00784 Bda-Chr3:6554733 Bda05g00964 Bda-Chr5:58134678 2.89E-170 wgd
Bda03g00784 Bda-Chr3:6554733 Bda09g01508 Bda-Chr9:46841799 1.23E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00784 - - nnu:104597175 477.633