Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00819 ATGGAAATGGCTACGAGTCCACGCACCGTAGAGGAGATCTACAGAGATTATAGCGCCAGAAGAACTGGCGTTGTCCGCGCTTTGACTCGTGATGTGGATGAATTCTATAATCTCTGTGATCCAGACAAAGAAAACTTGTGTCTTTATGGACACCCAAATGAAGCCTGGGAAGTGACTCTTCCTGCCGAAGAGGTTCCACCGGAGCTTCCAGAACCAGTGCTTGGAATAAATTTTGCTAGAGATGGGATGAACCGCAAAGACTGGATTTCTTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATCTCGGTGCCCGTCTTAACCGGAATGAAAGGAAGCATCTGTTTAGCTTGATCAATGATTTACCGACGGTCTTTGAAGTTGTGACTGAGAGAAACCCTGTTAAAGATAACCCCAGTGTGGACAGTGGAAGCAAATCTCGATCAAGCACAAAGTTTTCACGTGTATGCATTACCCAAAGTTCCTGCCTTCTGCAGAGATCAAATGATGGTCAATTGAAAAGCAACCCCAAAGCTGCTGAAGAAAATTACGAAGAAGATGAAGACGAACTGAATGAAACCCTCTGTGGGAGCTGTGGCGGAAACTACAGTGCAGATGAGTTTTGGATAGGCTGCGACATATGCGAAAGGTGGTTCCATGGGAAGTGTGTAAAGATAACACCTGCTAAGGCTGAGAATATAAAGCAATACAAGTGCCCATCTTGCAGCTTGAAGAAAGGTAGACAGTAA 762 44.88 MEMATSPRTVEEIYRDYSARRTGVVRALTRDVDEFYNLCDPDKENLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNRNERKHLFSLINDLPTVFEVVTERNPVKDNPSVDSGSKSRSSTKFSRVCITQSSCLLQRSNDGQLKSNPKAAEENYEEDEDELNETLCGSCGGNYSADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPSCSLKKGRQ 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6954682 6956979 + Bda016807.1 Bda03g00819 4078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00819 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Bda03g00819 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 247 IPR013083 -
Bda03g00819 253 SUPERFAMILY FYVE/PHD zinc finger 187 251 IPR011011 -
Bda03g00819 253 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 252 - -
Bda03g00819 253 SMART PHD_3 199 247 IPR001965 -
Bda03g00819 253 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Bda03g00819 253 PANTHER CPG BINDING PROTEIN 3 252 IPR045104 GO:0006355|GO:0042393
Bda03g00819 253 CDD PHD_AL_plant 199 249 IPR044104 -
Bda03g00819 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Bda03g00819 253 Pfam PHD-finger 200 247 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00819 Bda-Chr3:6954682 Bda06g00180 Bda-Chr6:2481505 3.22E-93 dispersed
Bda01g00163 Bda-Chr1:23147842 Bda03g00819 Bda-Chr3:6954682 6.10E-85 wgd
Bda14g00249 Bda-Chr14:1747643 Bda03g00819 Bda-Chr3:6954682 1.87E-110 wgd
Bda15g00255 Bda-Chr15:5144962 Bda03g00819 Bda-Chr3:6954682 1.38E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15696 PF12165 Alfin 1.50E-67 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00819 - - cit:102609983 423.705