Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00819 | ATGGAAATGGCTACGAGTCCACGCACCGTAGAGGAGATCTACAGAGATTATAGCGCCAGAAGAACTGGCGTTGTCCGCGCTTTGACTCGTGATGTGGATGAATTCTATAATCTCTGTGATCCAGACAAAGAAAACTTGTGTCTTTATGGACACCCAAATGAAGCCTGGGAAGTGACTCTTCCTGCCGAAGAGGTTCCACCGGAGCTTCCAGAACCAGTGCTTGGAATAAATTTTGCTAGAGATGGGATGAACCGCAAAGACTGGATTTCTTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATCTCGGTGCCCGTCTTAACCGGAATGAAAGGAAGCATCTGTTTAGCTTGATCAATGATTTACCGACGGTCTTTGAAGTTGTGACTGAGAGAAACCCTGTTAAAGATAACCCCAGTGTGGACAGTGGAAGCAAATCTCGATCAAGCACAAAGTTTTCACGTGTATGCATTACCCAAAGTTCCTGCCTTCTGCAGAGATCAAATGATGGTCAATTGAAAAGCAACCCCAAAGCTGCTGAAGAAAATTACGAAGAAGATGAAGACGAACTGAATGAAACCCTCTGTGGGAGCTGTGGCGGAAACTACAGTGCAGATGAGTTTTGGATAGGCTGCGACATATGCGAAAGGTGGTTCCATGGGAAGTGTGTAAAGATAACACCTGCTAAGGCTGAGAATATAAAGCAATACAAGTGCCCATCTTGCAGCTTGAAGAAAGGTAGACAGTAA | 762 | 44.88 | MEMATSPRTVEEIYRDYSARRTGVVRALTRDVDEFYNLCDPDKENLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNRNERKHLFSLINDLPTVFEVVTERNPVKDNPSVDSGSKSRSSTKFSRVCITQSSCLLQRSNDGQLKSNPKAAEENYEEDEDELNETLCGSCGGNYSADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPSCSLKKGRQ | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6954682 | 6956979 | + | Bda016807.1 | Bda03g00819 | 4078 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00819 | 253 | ProSitePatterns | Zinc finger PHD-type signature. | 200 | 246 | IPR019786 | - | |
Bda03g00819 | 253 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 247 | IPR013083 | - | |
Bda03g00819 | 253 | SUPERFAMILY | FYVE/PHD zinc finger | 187 | 251 | IPR011011 | - | |
Bda03g00819 | 253 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 3 | 252 | - | - | |
Bda03g00819 | 253 | SMART | PHD_3 | 199 | 247 | IPR001965 | - | |
Bda03g00819 | 253 | Pfam | Alfin | 9 | 134 | IPR021998 | GO:0006355|GO:0042393 | |
Bda03g00819 | 253 | PANTHER | CPG BINDING PROTEIN | 3 | 252 | IPR045104 | GO:0006355|GO:0042393 | |
Bda03g00819 | 253 | CDD | PHD_AL_plant | 199 | 249 | IPR044104 | - | |
Bda03g00819 | 253 | ProSiteProfiles | Zinc finger PHD-type profile. | 197 | 249 | IPR019787 | - | |
Bda03g00819 | 253 | Pfam | PHD-finger | 200 | 247 | IPR019787 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00819 | Bda-Chr3:6954682 | Bda06g00180 | Bda-Chr6:2481505 | 3.22E-93 | dispersed | |
Bda01g00163 | Bda-Chr1:23147842 | Bda03g00819 | Bda-Chr3:6954682 | 6.10E-85 | wgd | |
Bda14g00249 | Bda-Chr14:1747643 | Bda03g00819 | Bda-Chr3:6954682 | 1.87E-110 | wgd | |
Bda15g00255 | Bda-Chr15:5144962 | Bda03g00819 | Bda-Chr3:6954682 | 1.38E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15696 | PF12165 | Alfin | 1.50E-67 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00819 | - | - | cit:102609983 | 423.705 |