Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00833 TTACTCTCTTTATCATTCTCTGCCACTCTTCTTCCTTCTCCTCTGCCTCTCGACTCCAGTTCCAGCTCCCTCCCCCCCACCCTTCGCAGATCCCAACTGAGCTACTCGTCCTTTGTCCGATGCGCATTCGCAGCTCCCCCCAGAAAATCCTCTTCTTCGCCGGGCTACAAGAAAGGGCTTCGGCGAAAAGCTAAAAAGAGGCATTGGAAAAAGGGTGAGTATCCACCCATTTCCAATGCAGCACAAGAACGGAGAACTTATTTTGAAAAACAAGGAGAGTATCCATCCATATCACCAGGAGCGGCGGCGAGAAAACCTTCTTCATCGTCAATTTCTTATTCGTCGCCGGAAGCAACAAAGAGGCATTGGAAGAAAGGTGAGTATCCGGGGATTTCTGAAAATTGGTTACCCGGAACTTCAAAAAATTCACCCATAAAAAATGTCAAGAAAAGATTGGAGCGCAGAGAAAAAGCAAAGGCGTGGGTTACTACTGTCACAGAAGCTTTATCTGATAGTATCCTCAAGAAGCAGTGGCTTCAAGCTCTAGAGGTATTTGACATGCTTCGGGAGCAACCATTTTATCAACCAAAAGAAGGGACCTATATGAAGCTCCTTGTTCTTCTAGGAAGATCTGGGCAGCCACACCGAGCCCATCAGCTTTTTGACAAAATGAATGAAGAAGGATGTCCGCCTACTCCCGAACTTTACACAGCTTTACTAGCAGCTTATTGTCGGAACAATCTCATCGACAATGCATTTACAATTCTTAACCAAATGAAGGCCCTTCCTTCTTGCCAGCCTGATGTTTTCACATATAGTACTTTAATTAAGGCTTGTGTTGATGCTTCACAATTTGAATTACTTGAATCCTTGTATCAGGAGATGGATGAGAGATTAATAACTCCCAATACAGTGACCCAGAACATAGTTTTGAGTGGGTATGGTAAGGTGGGGAAATATGAACAAATGGAGAAAGTCTTATCAGGAATGTTGGAGAGCTCAACTTGCAAACCTGATGTTTGGACGATGAATATCATTCTAGGTGTTTTTGGCAACAAGGGTCAGATCGATATTATGGAAAGATGGTACGAGAAATTTCGCAACTTTGGAATTGAGCCAGAAACACGTACCTTCAATATTTTAATCGGTGCGTATGGGAAGAAACGGATGTACGACAAAATGTCGTCTGTGATGGAGTACATGAGGAAACTTCAATTTCCTTGGACAACCTCTACTTACAATAATGTCATCGAAGCTTTTGCAGATGTCGGAGATGCAAAGAATATGGAGTATACATTTGATCAGATGCGGACGGAGGGCATGAGAGCTGATACCAAAACATTCTGCTGCATAATCAATGGCTATGCCAATGCGGGTCTCTTCCACAAAGTAGTAAGCAGTGTACAATTGGCCGGGAAGTTTGAGATACCGGAAAATACCTCGTTCTATAATGTGGTAATATCTGCATGTGCAAAGGCAGAGGATTTGATGGAGATGGATAGAGTATTTTCACGAATGAAAGCCAATCAATGTCAGCCAAATAGCAAAACATACTCCATAATGATTGAGGCGTACAAAAAGGAAGGCATGAACGATAGGGTCTATGATTTGGAGCAGGAAATGAAGAACACAGTTTTTGACTTTCCTCAAGAGAGT 1656 42.93 LLSLSFSATLLPSPLPLDSSSSSLPPTLRRSQLSYSSFVRCAFAAPPRKSSSSPGYKKGLRRKAKKRHWKKGEYPPISNAAQERRTYFEKQGEYPSISPGAAARKPSSSSISYSSPEATKRHWKKGEYPGISENWLPGTSKNSPIKNVKKRLERREKAKAWVTTVTEALSDSILKKQWLQALEVFDMLREQPFYQPKEGTYMKLLVLLGRSGQPHRAHQLFDKMNEEGCPPTPELYTALLAAYCRNNLIDNAFTILNQMKALPSCQPDVFTYSTLIKACVDASQFELLESLYQEMDERLITPNTVTQNIVLSGYGKVGKYEQMEKVLSGMLESSTCKPDVWTMNIILGVFGNKGQIDIMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFDQMRTEGMRADTKTFCCIINGYANAGLFHKVVSSVQLAGKFEIPENTSFYNVVISACAKAEDLMEMDRVFSRMKANQCQPNSKTYSIMIEAYKKEGMNDRVYDLEQEMKNTVFDFPQES 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7138913 7141211 - Bda033502 Bda03g00833 4092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00833 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Bda03g00833 552 PANTHER ATPASE EXPRESSION PROTEIN 3 102 545 - -
Bda03g00833 552 Gene3D Tetratricopeptide repeat domain 332 404 IPR011990 GO:0005515
Bda03g00833 552 Gene3D Tetratricopeptide repeat domain 405 467 IPR011990 GO:0005515
Bda03g00833 552 Gene3D Tetratricopeptide repeat domain 468 546 IPR011990 GO:0005515
Bda03g00833 552 Pfam Pentatricopeptide repeat domain 408 456 IPR002885 -
Bda03g00833 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Bda03g00833 552 TIGRFAM PPR: pentatricopeptide repeat domain 200 232 IPR002885 -
Bda03g00833 552 TIGRFAM PPR: pentatricopeptide repeat domain 377 405 IPR002885 -
Bda03g00833 552 TIGRFAM PPR: pentatricopeptide repeat domain 305 340 IPR002885 -
Bda03g00833 552 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Bda03g00833 552 TIGRFAM PPR: pentatricopeptide repeat domain 412 444 IPR002885 -
Bda03g00833 552 TIGRFAM PPR: pentatricopeptide repeat domain 483 514 IPR002885 -
Bda03g00833 552 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Bda03g00833 552 MobiDBLite consensus disorder prediction 102 117 - -
Bda03g00833 552 MobiDBLite consensus disorder prediction 44 119 - -
Bda03g00833 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 262 IPR002885 -
Bda03g00833 552 Pfam PPR repeat 377 404 IPR002885 -
Bda03g00833 552 Pfam PPR repeat 200 229 IPR002885 -
Bda03g00833 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Bda03g00833 552 PANTHER OS03G0309800 PROTEIN 102 545 - -
Bda03g00833 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 338 IPR002885 -
Bda03g00833 552 Gene3D Tetratricopeptide repeat domain 161 331 IPR011990 GO:0005515
Bda03g00833 552 Pfam PPR repeat family 236 280 IPR002885 -
Bda03g00833 552 Pfam PPR repeat family 302 347 IPR002885 -
Bda03g00833 552 Pfam PPR repeat family 479 525 IPR002885 -
Bda03g00833 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Bda03g00833 552 MobiDBLite consensus disorder prediction 55 70 - -
Bda03g00833 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Bda03g00833 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00833 - - - mdm:103452739 756.133
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00833 Bda-Chr3:7138913 Bda11g01240 Bda-Chr11:12927527 2.95E-26 dispersed
Bda03g00833 Bda-Chr3:7138913 Bda08g01169 Bda-Chr8:46723082 3.20E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00833 Bda_Chr03 FPKM 1.131443 1.322256 0.0 0.0 2.928739 3.136009 3.914677 0.0 0.0