Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00840 CGTTGTCAGGGCGAGGGGGACGTCAAGATGGCGTCTGCAACAGTCAACGGAACGACAGTCTGCCCGGCTCCGATGAAGGCGACGTCGAATGGATCGTTTCAGGGGGATAATCCTCTCGATTATGCTCTTCCTCTGGCCATCCTCCAGATCTGTCTGGTGGTGGCTTTTACCAGATCCCTCGCTTTGATCCTCAGGCCTCTCAGGCAGCCCAGAGTTATTGCTGAGATCATTGGAGGAATACTGCTTGGGCCTTCTGCTCTTGGGCGAAACGAGAAATTTCTTCACACCGTCTTCCCAAAAAGAAGCATGACTGTGTTGGACACACTAGCTAGCATTGGCCTTCTCTTCTTCCTGTTTCTCGTCGGACTGGAGCTCGACATGCGGGCCCTCCGTCGCACCGGTACCAAGGCTCTAGGAATAGCACTCGCCGGCATCAGTCTCCCCTTCGTCCTCGGCATCGGCTCCTCCTTTGTCCTTCGAGCGACGATATCTACCGGAGTGAAGGAAGGCCCATTTCTCGTCTTCATGGGGGTCTCCTTGTCGATAACGGCCTTCCCTGTTCTCGCTCGAATCCTAGCCGAGCTTAAACTTCTGACTACAGATGTCGGGCGGATTGCGATGTCTGCAGCCGCCGTAAATGACGTCGCCGCTTGGATTTTGCTCGCGCTCGCCATTGCTCTGTCCGGCAACGAAACGTCTCCTCTAGTTTCCGTATGGGTTCTGCTAAGCGGGGTGGGTTTCGTTGCCTTCGTCGTCGTGGTATTAAGACCGGGACTCGCGCTAATGGCCCGACGGTCCCCTCAGGGTGAGCCGGTGAAGGAGCTCTACATATGCATCACCTTGTCGTTGGTTTTGGCAGCCAGTTTCGTCACCGATGCGATCGGAATACATGCCCTTTTCGGCGCTTTCGTCATCGGCATAGTGGTGCCCAAGGACGGGGTGTTTGCAGGGGTGCTTATAGAAAAGATAGAGGATCTGGTTTCTGGTCTTCTTCTTCCTCTTTACTTCGTCTCGAGCGGGCTGAAGACGAACGTTGCGACGATAAGCGGTGGGCTTTCTTGGGGCCTGCTTGCGATCGTCATTTTCACAGCTTGCTTTGGGAAGATTGTTGGGACTTTGGCAGTTTCGATGTTGTTCAAAGTTCCTTTCAGAGAAGCTCTGGCTCTTGGGTTCCTTATGAACACCAAAGGGCTAGTGGAGCTCATCGTCCTCAATATTGGCAAGGACAGAAAGGTATTGAACGACCAAACCTTTGCTATTTTAGTGCTAATGGCGTTGTTTACAACTTTCATTACAACCCCACTAGTTATGGCGGTGTACAAGCCTGCCAGAAAAGGATCACCGTACAAGCACCGAACCATCCGAAGAAAAGACCGCGAATCCGAGCTTCGAATACTCGCCTGCTTCCATAGCACTCGAAACATCCCCACCATGATCAACCTGATCGAGTGCTCCCGCGGGATTCGAAAAAGAGGCCGTCTTTGCATCTATGCTTTGCATCTCATGGAGCTCTCCGAGCGATCTTCCGCCATTTCCATGGTCCACAAGGCCAGAAACAACGGCCTACCGTTCTGGAACAAGAAGAGAGACAACAGAGATGAGATGATCATCGCGTTCGAGGCGTATCAGCAACTCAGCAGCGTTACCGTCCGTCCGATGACTGCAATTTCGTCTCTGAACGACATGCATGAGGATATTTGTACGAGTGCGCACCAAAAACGGGCGGCCATGATTCTGATTCCTTTCCATAAACATCAGAGAGTAGATGGGGCGATGGAGTCTCTCGGCCATTCCTTCCACACGGTGAACCAACGGGTTCTCCTTCACGCCCCTTGCAGCGTCGGAATTTTAATCGATAGAGGGCTTGGCGGGACCACCCAAGTGTCGGCTAGCGAAGTATCGTACAGTATCGTCGTGCCGTTTTTCGGCGGAGGGGACGACCGGGAAGCACTTGCCTTCGGTTTGAGGATGGCCGAACATTATCTGAAGGTGGTGAAGTTTGTTGGGTCACTGATCGAAAATGTCAACGAGGAAGCGGCGGAGGACGAAACCAGCATCTCTGAATTCTTGGGTTGCACGGAACAGGAAGATTCAATGTCATACGAAGAAAGAAACATCGGAAGCAAAACAGACATAGTGGAAGCGTTGAAGTCGTTAAACAAGTTCAATCTGTTTTTGGTCGGAAGAGCAACAATGTCGGGCACGCCATTGACAAACCGGAGCGACTGCCCGGAGCTGGGGACAGTGGGGGGATTCCTAGCGTCGTCGGAATTTTCAACGACGGCGTCGGTCGTGGTGGTTCAGGAGTACAATGCTTTGAAGAACACAAGACCACTGGTGGAGGAAGAGGCGGATGGGTACGCAAATGAAGCACCAGACACACCGGCGGCTTCAAATTTTGTGTCGGAGAGAATCATATAA 2421 52.54 RCQGEGDVKMASATVNGTTVCPAPMKATSNGSFQGDNPLDYALPLAILQICLVVAFTRSLALILRPLRQPRVIAEIIGGILLGPSALGRNEKFLHTVFPKRSMTVLDTLASIGLLFFLFLVGLELDMRALRRTGTKALGIALAGISLPFVLGIGSSFVLRATISTGVKEGPFLVFMGVSLSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIALSGNETSPLVSVWVLLSGVGFVAFVVVVLRPGLALMARRSPQGEPVKELYICITLSLVLAASFVTDAIGIHALFGAFVIGIVVPKDGVFAGVLIEKIEDLVSGLLLPLYFVSSGLKTNVATISGGLSWGLLAIVIFTACFGKIVGTLAVSMLFKVPFREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMALFTTFITTPLVMAVYKPARKGSPYKHRTIRRKDRESELRILACFHSTRNIPTMINLIECSRGIRKRGRLCIYALHLMELSERSSAISMVHKARNNGLPFWNKKRDNRDEMIIAFEAYQQLSSVTVRPMTAISSLNDMHEDICTSAHQKRAAMILIPFHKHQRVDGAMESLGHSFHTVNQRVLLHAPCSVGILIDRGLGGTTQVSASEVSYSIVVPFFGGGDDREALAFGLRMAEHYLKVVKFVGSLIENVNEEAAEDETSISEFLGCTEQEDSMSYEERNIGSKTDIVEALKSLNKFNLFLVGRATMSGTPLTNRSDCPELGTVGGFLASSEFSTTASVVVVQEYNALKNTRPLVEEEADGYANEAPDTPAASNFVSERII 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7189169 7195899 + Bda016826.1 Bda03g00840 4099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00840 806 Pfam Sodium/hydrogen exchanger family 53 435 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bda03g00840 806 PANTHER CATION/H(+) ANTIPORTER 19 17 777 - -
Bda03g00840 806 Gene3D - 45 447 IPR038770 -
Bda03g00840 806 PANTHER CATION/H + ANTIPORTER 17 777 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00840 - - - twl:119989874 1166.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00840 Bda-Chr3:7189169 Bda07g00523 Bda-Chr7:6717347 1.68E-132 dispersed
Bda01g00243 Bda-Chr1:26611821 Bda03g00840 Bda-Chr3:7189169 8.93E-65 transposed
Bda01g01769 Bda-Chr1:53936533 Bda03g00840 Bda-Chr3:7189169 0 transposed
Bda06g00131 Bda-Chr6:2017833 Bda03g00840 Bda-Chr3:7189169 0 transposed
Bda07g00029 Bda-Chr7:467471 Bda03g00840 Bda-Chr3:7189169 0 transposed
Bda09g00692 Bda-Chr9:10845238 Bda03g00840 Bda-Chr3:7189169 3.83E-87 transposed
Bda14g00228 Bda-Chr14:1537113 Bda03g00840 Bda-Chr3:7189169 2.40E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g290 . . Bda03g00840 . Bpe04g00795 . Bma04g00738 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0671 Cone15ag0680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00029 . 11 793 Antiporter Super Family AT2G13620 71.8 0.0e+00 1146.3
Bda01g01769 . 10 821 Antiporter Super Family AT2G13620 69.4 0.0e+00 1120.1
Bda06g00131 . 858 1560 Antiporter Super Family AT3G53720 50.8 7.4e-187 651.0
Bda03g00840 . 93 771 Antiporter Super Family AT3G53720 50.5 2.4e-185 646.0
Bda06g00131 . 786 1556 Antiporter Super Family AT5G41610 68.4 2.4e-297 1018.1
Bda03g00840 . 16 771 Antiporter Super Family AT5G41610 64.8 1.6e-277 952.2
Bda06g00131 . 1 803 Antiporter Super Family AT4G23700 65.6 1.6e-293 1005.4
Bda03g00840 . 16 770 Antiporter Super Family AT4G23700 61.4 2.7e-264 908.3
Bda03g00840 . 13 785 Antiporter Super Family AT3G17630 71.8 2.0e-312 1068.1
Bda06g00131 . 780 1555 Antiporter Super Family AT3G17630 63.8 2.2e-271 931.8
Bda06g00131 . 776 1556 Antiporter Super Family AT1G64170 55.3 2.5e-230 795.4
Bda03g00840 . 15 770 Antiporter Super Family AT1G64170 55.2 6.7e-223 770.8
Bda07g00029 . 11 793 Antiporter Super Family AT2G13620 71.8 0.0e+00 1146.3
Bda01g01769 . 10 821 Antiporter Super Family AT2G13620 69.4 0.0e+00 1120.1
Bda06g00131 . 776 1556 Antiporter Super Family AT1G64170 55.3 2.5e-230 795.4
Bda03g00840 . 15 770 Antiporter Super Family AT1G64170 55.2 6.7e-223 770.8
Bda06g00131 . 1 803 Antiporter Super Family AT4G23700 65.6 1.6e-293 1005.4
Bda03g00840 . 16 770 Antiporter Super Family AT4G23700 61.4 2.7e-264 908.3
Bda06g00131 . 786 1556 Antiporter Super Family AT5G41610 68.4 2.4e-297 1018.1
Bda03g00840 . 16 771 Antiporter Super Family AT5G41610 64.8 1.6e-277 952.2
Bda03g00840 . 13 785 Antiporter Super Family AT3G17630 71.8 2.0e-312 1068.1
Bda06g00131 . 780 1555 Antiporter Super Family AT3G17630 63.8 2.2e-271 931.8
Bda06g00131 . 858 1560 Antiporter Super Family AT3G53720 50.8 7.4e-187 651.0
Bda03g00840 . 93 771 Antiporter Super Family AT3G53720 50.5 2.4e-185 646.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00840 Bda_Chr03 FPKM 8.716187 8.472183 10.389348 12.299887 23.168621 21.647724 23.608624 17.314117 15.934009