Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00846 CTGGCTAATCCGTGGTGGACCGGCCAAGTGGGGCTGCCGATCATTGACTCGGCAGCCTCCAATTCACCTCTTCTGAAACTCCAACACAACCGTGAAGGTTCCATGAATGATCAACACAGTCGAGAAGAAGAAGAAGACGAGAGAGAACATGGATCAGACGAACCCAAAGAAGGAGCCGTGGAGATCGGCAATCGAAGACCAAGAGGCCGCCCTCCCGGATCCAAAAACAAGCCGAAACCACCGATTTTCGTGACTCGAGATAGCCCAAACGCCCTCCGCAGCCACGTAATGGAAGTAGCCGGTGGGGCTGACGTCGGAGAGAGCGTCGCTCAGTTCGCTAGGCGCAGGCAGCGCGGCGTGTGCGTTCTGAGCGCTAGCGGCTCAGTCACTAACGTCACTCTCCGACAGCCAGCTGCACCCAGTGCTGTGGTGGCGCTGCATGGACGGTTCGAAATTTTGTCACTGACCGGAGCTTTCTTACCCGGACCGGCCCCACCAGGCTCGACGGGTATGACCATTTATCTCGCCGGAGGGCAAGGGCAGGTGGTTGGTGGTTGTGTAGTTGGGCCATTAGTTGCAGCTGGGCCAGTCATGGTGATTGCTGCAACTTTTTCTAACGCCACTTACGAAAGATTACCTCTCGAAGAAGACGACGATCATGAAGCTGGTATAGGTAGTACCGGAGCTGGAACCTCGCCGCCTTCCATTGGAGGCAGTGGAGGGAGTTTTCAGCCCAATTCCTCTGATCTTTCTGCACTTCCTATTTATAATTTGCCTCCTAATCTTCTCCCCAATGGAGGTCAACTCGGACATGACCAGGCTGCATATGCTGCATGGGCTTCTCATGGGAGACCTAGCTTCTGA 864 55.09 LANPWWTGQVGLPIIDSAASNSPLLKLQHNREGSMNDQHSREEEEDEREHGSDEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGADVGESVAQFARRRQRGVCVLSASGSVTNVTLRQPAAPSAVVALHGRFEILSLTGAFLPGPAPPGSTGMTIYLAGGQGQVVGGCVVGPLVAAGPVMVIAATFSNATYERLPLEEDDDHEAGIGSTGAGTSPPSIGGSGGSFQPNSSDLSALPIYNLPPNLLPNGGQLGHDQAAYAAWASHGRPSF 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7311081 7311944 + Bda016836.1 Bda03g00846 4105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00846 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 286 IPR014476 GO:0003680
Bda03g00846 287 MobiDBLite consensus disorder prediction 32 64 - -
Bda03g00846 287 Gene3D - 92 222 - -
Bda03g00846 287 CDD DUF296 93 176 IPR005175 -
Bda03g00846 287 PIRSF ESCAROLA 10 287 IPR014476 GO:0003680
Bda03g00846 287 ProSiteProfiles PPC domain profile profile. 89 225 IPR005175 -
Bda03g00846 287 MobiDBLite consensus disorder prediction 218 244 - -
Bda03g00846 287 MobiDBLite consensus disorder prediction 228 244 - -
Bda03g00846 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 206 IPR005175 -
Bda03g00846 287 MobiDBLite consensus disorder prediction 16 88 - -
Bda03g00846 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 218 - -
Bda03g00846 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 7 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00846 Bda-Chr3:7311081 Bda15g00342 Bda-Chr15:6271137 5.64E-86 dispersed
Bda15g00235 Bda-Chr15:5005579 Bda03g00846 Bda-Chr3:7311081 6.21E-12 dispersed
Bda11g00619 Bda-Chr11:6253207 Bda03g00846 Bda-Chr3:7311081 9.24E-10 wgd
Bda13g00078 Bda-Chr13:999355 Bda03g00846 Bda-Chr3:7311081 1.43E-70 wgd
Bda03g00846 Bda-Chr3:7311081 Bda08g00269 Bda-Chr8:2778593 8.70E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00846 - - egr:104415381 327.405