Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00849 ATGGAAACCAGGGAAACATTCCTGAAACTGGAACTACCAAGCGCGGTAGAATCCGAGGAGGTAGATGCGATCTTCATCAAGGGGACCTGGTTAGAATCTCGCTTCCATCTCTCCCTTACTGATGGTCTCCATGCTTGGATCTGCGATGCTTCGGTGGAGGAGGTGCGAGAACGTGCTGAGCAGTGGGATCAAGAGGTCTCAGTTTACATAGCTATGGCGGAGCGGTATTTAGGGTTTCTACAACCGGAATCGACCTATGGGTTTACCGATGCTGGAAATGGATTTAAAAGGCTCTCGTGGACATTTGAAAAGGAAGGGACCAAGCTAGAATGGCGATGGAGATGTGAGCCGTCACCTAATAATAAGAAAACTACGTCAGGAATATTGGACTTCCTCGCAGCTGGGAACACAAGGCTGAGCGAGGAAGTTGTTAGAAAAAATCAATCATTTGAGAGATTGAAATTAGAAGCTGAGAAATGCTTAGCCCAAAGTGAGAGAATTAGCAGCGAGAAAATGGAGTTTGAGTCTGCAATTTACACAAAGTTTCTTGGTGTCTTGAATTCGAAGAAAGCAAAACTCAGACAGCTTCGAGATCAGCTGTCTGAGCAGAAAATTACTGGGAAATCATCAGAAGCAGAGGATTACTCCACAGAGAAAACTGAAAGTTTTAAAGGTGAAAGTGAAAACGAAAAGAGTGAGGAAGAGGCTTTGAAAGATGTCATTGACACGGCCGGTTCAACTAGTGTTTCAAGAGGTAAAACTCGAGGCCGAAAGAGAAAAATAACGCTATAA 792 44.32 METRETFLKLELPSAVESEEVDAIFIKGTWLESRFHLSLTDGLHAWICDASVEEVRERAEQWDQEVSVYIAMAERYLGFLQPESTYGFTDAGNGFKRLSWTFEKEGTKLEWRWRCEPSPNNKKTTSGILDFLAAGNTRLSEEVVRKNQSFERLKLEAEKCLAQSERISSEKMEFESAIYTKFLGVLNSKKAKLRQLRDQLSEQKITGKSSEAEDYSTEKTESFKGESENEKSEEEALKDVIDTAGSTSVSRGKTRGRKRKITL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7358840 7360621 + Bda016839.1 Bda03g00849 4108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00849 263 SUPERFAMILY XRCC4, C-terminal oligomerization domain 120 210 - -
Bda03g00849 263 Gene3D - 14 113 IPR038051 -
Bda03g00849 263 PANTHER DNA REPAIR PROTEIN XRCC4 1 260 IPR010585 GO:0003677|GO:0005634|GO:0006302|GO:0006310
Bda03g00849 263 Coils Coil 183 206 - -
Bda03g00849 263 Pfam DNA double-strand break repair and V(D)J recombination protein XRCC4 31 237 IPR010585 GO:0003677|GO:0005634|GO:0006302|GO:0006310
Bda03g00849 263 MobiDBLite consensus disorder prediction 203 263 - -
Bda03g00849 263 MobiDBLite consensus disorder prediction 207 240 - -
Bda03g00849 263 Gene3D - 117 215 IPR014751 -
Bda03g00849 263 SUPERFAMILY XRCC4, N-terminal domain 29 110 IPR009089 GO:0003677|GO:0005634|GO:0006302|GO:0006310
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00849 K10886 XRCC4; DNA-repair protein XRCC4 - cit:102621916 319.316
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g623 . Blo12g00358 Bda03g00849 . Bpe04g00803 . Bma04g00749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012329 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00849 Bda_Chr03 FPKM 18.74473 19.163866 15.606396 17.40671 15.476556 17.001989 16.592022 26.407804 22.966003