Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00872 ATGGGAAAGGCAGGCTCATGGCTGAGAAGCTTCTTGACGGCGAAGAAAGAGAAGAAGGAAAAATACCCAAGGAATCCAAATTCTTCAGTTTTGATTCAGAATCCAGTTCCTCCTTCTACTTCAAAAGAAAGAAGAAGATGGAGTATCAGAAAATCTTCATCCGCTGCGCAGGATAAGAACTCAAATTCGAACCAGTCAACTGTCAACCATTTTTCCGGCGTTCATGTCGACAAGACAGTGAAGAACACATCCTCTATTGAAAATGCTGCAGCGACGAGAATTCAGTCGGCTTTTCGGTCTTATTTGGCAAGAAAGGCTCTTCGTGCACTGAGAGGATTGGTGAAGTTGCAGGCGTTAGTTAGAGGTCATTTGGTGAGACAACAGGCCACCGACACTCTCCGCCGCATGCAGGCGCTGATGACAGCACAGGCTCGAGCTCGCGCGCAGAGGCTTCAAATGGCGGAAGATTATTCAAAGTGTAGTACACCGAGGAATTTCCAGGGAAAATACAGTCGCTGCTCATTTAAGACGGTAAAACTGGCGTTGACGCAGGAGACTGAAAGAGGAATGGAGGAGAATATCAAGATTGTGGAGGTCGATCATGGAGAATACAAGGGATTTACAAATTACACACAAAGAGACAGAAGAGAAAATCATAAATTTTCAACCAAGCAAGAACATCATCAAACCAGCCGTAGCTCACCGGCCAAAACTGGCCATTTTGACGGTTATTACTATTCACCAACCATCCGACGAAGCAGCACACAAAACAAGCCAAATTATGTGGAATTTCAGGCCAATGATAGCCCGTTCTACCCTAATTACATGGCCAATACTGAGTCCTCAAGGGCTAAAGTTAGGTCCCAGAGTGCACCCAAGACTAGACCACCCGACTCGTCGGAGAGCCAACCGAGCCGGAGACGGGCATCGATGGAAGGCCGGTATTGTCCGAGGCCGGTTCGGACCATGCAACGGTCTCCTTCCCAAGTCGGGTGGGGAGCTCAAAACTATGACAATCCATGGTCAGTTAAGGTGGACAAATCTCCAGTTTCACTCATGAACAGCGAGTGTGGCTCTACTAGCACAATTCTATCAAGAACCCACTATTGCAGATCTCTTGCTGCTTATGATAGTTTCAAACATGGAGTCCAAATTCCTCCATCTAAACCATTTCTGGAGTCTCTCAAATCGACATTGAAAGAGACTCTATTTCCTGATGATCCTTTCAGACAGTTCAAGAATCAGCCATTCTCCAGGAAGATCTTTCTCGGACTTCAGTACTTCGTGCCGATTATTGAATGGGGTCCTCGCTATTCTTTTCAATTCTTCAAGAGTGATGTTGTTTCAGGAATCACCATTGCCAGTTTGGCTGTTCCACAGGGTATAAGCTATGCGAATTTGGCGAGTATACCTCCAATTATTGGACTCTATTCAAGCTTTGTTCCTCCATTGATTTATGCGATGCTTGGAAGTTCAAAGGATATTGCTGTAGGAACTATTGCAGTTGTGTCTCTTCTCATGACTGCCATGCTCGGAGAAGTTGCTAATCCTAAGCGGAACCCCGTCGAGTATCTTCACTTGGTTTTCACTGCAACTTTCTTTGCTGGTGTCTTTCAAGCTGCCCTTGGCTTCTTAAGAGAAAATGGGGTGCAATGCAGGCTAGGGTTTGTGGTGGATTTTCTATCGCATGCGACGATAGTAGGTTTCATGGGAGGAGCAGCTACAGTTATATGTCTGCAACAGCTGAAAGGGATTCTTGGTTTAGTTCATTTCACTCATGAAACTGATATTGTATCAGTCTCAACATCTATTTTCTCCCAAGTTCACCAATGGAAGTGGGAGACTGTAGTCATGGGCTGCTGCTTTCTTTGCTTCCTAGTCGTCTTTAGAATATATAGCAAGAAGAAGCAGGTGTTCTTCTGGATAAACGCTTTGGCTCCATTGATATCTGTGATTCTTGGAAGCCTTTTTGTCTATCTCACTCGTGCTGAGAAGCATGGCGTTCAAGTTATTGGAGAGCTGAAGAAGGGACTCAATCCAATTTCGTTGACTGACTTGGCATTTGGATCACCATATCTAACTACTGCTATCAAAACTGGCATCATCGCTGGTACCATCGGCCTTGCTGAAGGAGTTGCAGTGGGAAGAAGCTTTGCCACATTTAAGAACTACCACATCAATGGCAATAAAGAGATGATAGCTTTTGGGATGATGAACATCATAGGCTCTTTCACTTCTTGCTACCTAACTGGAGGACCATTCTCGCGCACAGCGGTGAATTTTAATGCCGGATGCAAAAGTGCAATTTCAAATATTGTTATGGCATTTGGAGTGATGATGACTTTGTTATTTTTGACACCACTCTTCTATTACACTCCTCTTGTGGTGCTCTCTACTATAATCATCACTGCAATGCTGGGTCTAATAAACTACGAAGCTGTCATCCATCTTTGGAAGGTAGACAAATACGATTTTATGGTCTGTGTTTGTGCATATGTTGGCGTCGTTTTCGGGAGCATCGAAACCGGCTTAGTTGTAGCAGTTTCACTTTCCATTCTAAGAGTAGTCATGTTTGTGGCAAGACCAAAGACTCTCACACTAGGAAAAATCCCCAATTCCACAATTTACAGAAGTACAAATCAATACCCAAATACAGATTCTGTACCTGGAATTCTTATTCTGCAAATCGATGCACCAATCTACTTTGCCAACGCAAACTACCTCAGAGAAAGGGTCTTGAGGTGGATCTCCGAGGAGGAGGATCGACTCGAGGGTTTGGGAAAAACCAGCTTACAATATGTTATTATAGATACAAGCGTTGTTAGCAGCATTGATACTAGCGGGATTAGCTTTCTCAAAGAACTAAAGAATAATGTTGAAAGGAAAGACATCAAGCTCGTGCTTGCAAATCCACAAAGTGAAGTTATAAAAAAGCTAGCTAAGAGCAACTTCATTGAGACAATAGGGGAAGAGTGGATCCATCTCACCGTGGGAGAAGCCGTCGCCGCATGCAGCTTTATGCTTCACATGTCGAAGACAGACCTTCCTTCAGCTGAAGTTGTCGCAAATAATGACATAATTTAA 3084 44.07 MGKAGSWLRSFLTAKKEKKEKYPRNPNSSVLIQNPVPPSTSKERRRWSIRKSSSAAQDKNSNSNQSTVNHFSGVHVDKTVKNTSSIENAAATRIQSAFRSYLARKALRALRGLVKLQALVRGHLVRQQATDTLRRMQALMTAQARARAQRLQMAEDYSKCSTPRNFQGKYSRCSFKTVKLALTQETERGMEENIKIVEVDHGEYKGFTNYTQRDRRENHKFSTKQEHHQTSRSSPAKTGHFDGYYYSPTIRRSSTQNKPNYVEFQANDSPFYPNYMANTESSRAKVRSQSAPKTRPPDSSESQPSRRRASMEGRYCPRPVRTMQRSPSQVGWGAQNYDNPWSVKVDKSPVSLMNSECGSTSTILSRTHYCRSLAAYDSFKHGVQIPPSKPFLESLKSTLKETLFPDDPFRQFKNQPFSRKIFLGLQYFVPIIEWGPRYSFQFFKSDVVSGITIASLAVPQGISYANLASIPPIIGLYSSFVPPLIYAMLGSSKDIAVGTIAVVSLLMTAMLGEVANPKRNPVEYLHLVFTATFFAGVFQAALGFLRENGVQCRLGFVVDFLSHATIVGFMGGAATVICLQQLKGILGLVHFTHETDIVSVSTSIFSQVHQWKWETVVMGCCFLCFLVVFRIYSKKKQVFFWINALAPLISVILGSLFVYLTRAEKHGVQVIGELKKGLNPISLTDLAFGSPYLTTAIKTGIIAGTIGLAEGVAVGRSFATFKNYHINGNKEMIAFGMMNIIGSFTSCYLTGGPFSRTAVNFNAGCKSAISNIVMAFGVMMTLLFLTPLFYYTPLVVLSTIIITAMLGLINYEAVIHLWKVDKYDFMVCVCAYVGVVFGSIETGLVVAVSLSILRVVMFVARPKTLTLGKIPNSTIYRSTNQYPNTDSVPGILILQIDAPIYFANANYLRERVLRWISEEEDRLEGLGKTSLQYVIIDTSVVSSIDTSGISFLKELKNNVERKDIKLVLANPQSEVIKKLAKSNFIETIGEEWIHLTVGEAVAACSFMLHMSKTDLPSAEVVANNDII 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7564021 7573318 + Bda016863.1 Bda03g00872 4131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00872 1027 MobiDBLite consensus disorder prediction 26 41 - -
Bda03g00872 1027 Pfam STAS domain 882 1000 IPR002645 -
Bda03g00872 1027 ProSiteProfiles IQ motif profile. 111 138 IPR000048 GO:0005515
Bda03g00872 1027 Pfam Sulfate permease family 443 830 IPR011547 GO:0016021
Bda03g00872 1027 Pfam Protein of unknown function (DUF4005) 255 312 IPR025064 -
Bda03g00872 1027 Gene3D - 84 141 - -
Bda03g00872 1027 CDD STAS_SulP_like_sulfate_transporter 882 997 - -
Bda03g00872 1027 ProSiteProfiles STAS domain profile. 881 1004 IPR002645 -
Bda03g00872 1027 MobiDBLite consensus disorder prediction 53 75 - -
Bda03g00872 1027 MobiDBLite consensus disorder prediction 15 75 - -
Bda03g00872 1027 MobiDBLite consensus disorder prediction 207 233 - -
Bda03g00872 1027 MobiDBLite consensus disorder prediction 300 314 - -
Bda03g00872 1027 Gene3D STAS domain 861 1006 IPR036513 -
Bda03g00872 1027 ProSiteProfiles IQ motif profile. 87 115 IPR000048 GO:0005515
Bda03g00872 1027 MobiDBLite consensus disorder prediction 271 299 - -
Bda03g00872 1027 SUPERFAMILY SpoIIaa-like 882 1004 IPR036513 -
Bda03g00872 1027 MobiDBLite consensus disorder prediction 207 314 - -
Bda03g00872 1027 MobiDBLite consensus disorder prediction 248 264 - -
Bda03g00872 1027 PANTHER SULFATE TRANSPORTER 379 1017 IPR001902 GO:0015301|GO:0016020|GO:0055085
Bda03g00872 1027 SMART iq_5 86 108 IPR000048 GO:0005515
Bda03g00872 1027 SMART iq_5 109 130 IPR000048 GO:0005515
Bda03g00872 1027 Pfam IQ calmodulin-binding motif 89 108 IPR000048 GO:0005515
Bda03g00872 1027 Pfam IQ calmodulin-binding motif 114 128 IPR000048 GO:0005515
Bda03g00872 1027 PANTHER BNAA04G05880D PROTEIN 379 1017 IPR030311 GO:0008272|GO:0009507|GO:0015116
Bda03g00872 1027 TIGRFAM sulP: sulfate permease 430 1000 IPR001902 GO:0015301|GO:0016020|GO:0055085
Bda03g00872 1027 ProSitePatterns SLC26A transporters signature. 472 493 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00872 Bda-Chr3:7564021 Bda10g01195 Bda-Chr10:45942382 0 dispersed
Bda12g00375 Bda-Chr12:4315043 Bda03g00872 Bda-Chr3:7564021 7.80E-25 dispersed
Bda12g00378 Bda-Chr12:4421489 Bda03g00872 Bda-Chr3:7564021 6.73E-34 dispersed
Bda12g01085 Bda-Chr12:42555112 Bda03g00872 Bda-Chr3:7564021 3.61E-26 dispersed
Bda12g01088 Bda-Chr12:42624656 Bda03g00872 Bda-Chr3:7564021 1.12E-21 dispersed
Bda01g01404 Bda-Chr1:49943944 Bda03g00872 Bda-Chr3:7564021 2.14E-23 transposed
Bda03g00504 Bda-Chr3:4272633 Bda03g00872 Bda-Chr3:7564021 0 transposed
Bda10g00103 Bda-Chr10:2537503 Bda03g00872 Bda-Chr3:7564021 4.78E-24 transposed
Bda10g00557 Bda-Chr10:39538278 Bda03g00872 Bda-Chr3:7564021 0 transposed
Bda12g00009 Bda-Chr12:68625 Bda03g00872 Bda-Chr3:7564021 0 transposed
Bda14g00107 Bda-Chr14:748662 Bda03g00872 Bda-Chr3:7564021 1.98E-112 transposed
Bda14g01473 Bda-Chr14:21453367 Bda03g00872 Bda-Chr3:7564021 0 transposed
Bda11g00594 Bda-Chr11:6054835 Bda03g00872 Bda-Chr3:7564021 3.63E-83 wgd
Bda03g00872 Bda-Chr3:7564021 Bda08g00246 Bda-Chr8:2552053 3.83E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00872 K17471 - csv:101203205 959.518