Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00875 ATGGACAGCCCCGATAGAACCCAGCTCGGAGCTGCTTCAGTTTCTAAAATTGAGAATTCTCCTGTTTTCAACTTCATTAGTACTCTTTCTCCTATCAAGCCCTTGAAGGCCATGCACACTAATCATGCGTTCAACTCGCTTAGTCTGAGAGCCGTTACATCTGTTTTTTCATCACCACATTCCAATTCTGCTAGAGAATATAGTCTCTTACGAGGGCACAGTTATGCAGATAGATCAAAACCCATTTCTCCTCCGAATGGGAATAAATTTTGCACAAACCAATGTGCATATGCAAGTGTGGATGAACTGGATAGTAACTCGGCTGTAATACACGAACATTTCGATGCTTCAAAAATGACAGCTTACACGTGTGGCAGCCCTGGATATAGTCCAAGTAGTAATCATTTTGGTATTCAATCAGATTGTATGTCAGAATCATGCTTTCTTGTACCTTATGTCCAAGAGGACTCTGACAAAGGTTCATATGAAAGGGAAAAGAATTTAGTCTGCCACATTGAACAGAGAAAAGAAGGAACCAGACATGGTTTGGAAAGTTTGATTTCTGATACTGGCAGCCCATTGATTTTTACTTCTCCTGATAGTTCAGAGTCTATGAGATTGATTCAGGATTCACTAGACCCAAAGACAAAATTCTCTAAAGGTCTTATGTCACAGTTAGCATCCAATGGGCAAAATTATATGCATGAACTGCCAAATGCTGATCACTGGCCAGATCATTCTTCTCTACTCAAAGACATGACCGAGCTAAACAAAATAGTGCCGACTCTTTATAATTATGCATCTTCTAATAGAAGTATGCATATCACAGCTGAGGAAGAAATATATAATGAGCCTGCATCCAGTTTGCATAATGCTACATGGAGGCGTGGTCTAGATTTTGAGATGGCAGGAGATTGTCGAAAAGGTACAGAAGATGGTAAAAATTCTAGTTCTTCTATTCTATCTCAATCAGATGAGAATTTTAATTCGAATAATAAACAAGCAGTACATTCTATGTCTTCTGGTCACTTGTCTTTGTGCATTTTACCCGGAATTGGATTGCATTTGAATGCTCTGGCAAAGAATCTGAAGCATTGCAAAAACGCCAGTGAAGAAATTTTGTCTTCTGGAAGACAATTAACCCTTCCCTGCACCACTGGCCAATCACATATATCCTCAACCTCTCATGAACCTCTCTTCACTTCAGCTGATTCTGAAAGAGAGATGGATCCTCTTGATAATAGGATTAAAATGGAGGAAGAAGCTCCTCAAGCATCTCACAATGTACTCAATGAAGAGTTCTATTGGGATAGCCCCAAAAGGAAGAGGCATGTTCAATGCATTATTTTGTTTTATGCTAGTTCTAGCAGGCTTAGGTCAGACCTAGCTGGAGAAAATGAGACATGCAAAAGATGCAACTGTAAGAAGTCAAAGTGTTTGAAACTCAGTTACTGTGAATGCTTTGCTTCTGGATTGTACTGTATTGAGCCATGCTCATGTCAAGAATGCTTTAACAAACCTGATCATCAAGAAACTGTTCTTGCAACTCGTAAATTGATTGAGTCTCGAAATCCGCTAGCCTTTGCTCCTAGAGTGATTTGGAGCTCTGATCATACGGCTGAACTTGGGGACGTTCCTCTTAAAACCCCAGCTTCATCAAGACATAAAACAGGATGCAATTGCAAGAAATCAAGTTGCTTGAAGAAATATTGCGAATGCTTTCAGGGTGGGGTTGGATGCTCTAGTAGCTGCAGATGTGAAAGGTGTAAAAATGCATTTGGTAAAAAATATGGAATTGAAGAAGAAACAAAATCATTCCAAAAGAATTTTTTGGGTAAATCTTTAACTTGCACTGAGATTCAGAACCATGGAGAACAAGATTTAGGCTCTGCACTTCCAATAAGAACCCCGTTGCTACCATGCAGGCCATTCACATTACAAAATCAAACATCCTGCTCTTCTTTCATTAATGTGGGAACACCTGCATTATGTGCTGAACGAAAACTCGAAAAGCCGAATATTCTCAGATCTCAACCCAAATTTGAGAAGGACGAAAAACTGGTTTTGGAAGGTATCTTACCGGCTTACAGAGATTGTTCCTCAAGAACCAGCTTCAGGACTGCTTCTCCAAACAGTAAGAGAGTGTCTCCCCTTCATTGCGATCCGGCTACTCGAATAGGTCGAAAGTTGATACTACGATCAATTCCTTCATTCCCGTCTCTCTCTCCTCAATGA 2235 40.09 MDSPDRTQLGAASVSKIENSPVFNFISTLSPIKPLKAMHTNHAFNSLSLRAVTSVFSSPHSNSAREYSLLRGHSYADRSKPISPPNGNKFCTNQCAYASVDELDSNSAVIHEHFDASKMTAYTCGSPGYSPSSNHFGIQSDCMSESCFLVPYVQEDSDKGSYEREKNLVCHIEQRKEGTRHGLESLISDTGSPLIFTSPDSSESMRLIQDSLDPKTKFSKGLMSQLASNGQNYMHELPNADHWPDHSSLLKDMTELNKIVPTLYNYASSNRSMHITAEEEIYNEPASSLHNATWRRGLDFEMAGDCRKGTEDGKNSSSSILSQSDENFNSNNKQAVHSMSSGHLSLCILPGIGLHLNALAKNLKHCKNASEEILSSGRQLTLPCTTGQSHISSTSHEPLFTSADSEREMDPLDNRIKMEEEAPQASHNVLNEEFYWDSPKRKRHVQCIILFYASSSRLRSDLAGENETCKRCNCKKSKCLKLSYCECFASGLYCIEPCSCQECFNKPDHQETVLATRKLIESRNPLAFAPRVIWSSDHTAELGDVPLKTPASSRHKTGCNCKKSSCLKKYCECFQGGVGCSSSCRCERCKNAFGKKYGIEEETKSFQKNFLGKSLTCTEIQNHGEQDLGSALPIRTPLLPCRPFTLQNQTSCSSFINVGTPALCAERKLEKPNILRSQPKFEKDEKLVLEGILPAYRDCSSRTSFRTASPNSKRVSPLHCDPATRIGRKLILRSIPSFPSLSPQ 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7585006 7590187 + Bda016866.1 Bda03g00875 4134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00875 744 SMART CXC_2 467 509 IPR033467 -
Bda03g00875 744 SMART CXC_2 554 595 IPR033467 -
Bda03g00875 744 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 470 506 IPR005172 -
Bda03g00875 744 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 557 592 IPR005172 -
Bda03g00875 744 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 743 - -
Bda03g00875 744 ProSiteProfiles CRC domain profile. 468 594 IPR005172 -
Bda03g00875 744 MobiDBLite consensus disorder prediction 313 334 - -
Bda03g00875 744 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 743 IPR044522 GO:0003700
Bda03g00875 744 MobiDBLite consensus disorder prediction 305 334 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00875 Bda11g00591 CCT
Bda03g00875 Bda13g00106 CCT
Bda03g00875 Bda11g00591 ECH
Bda03g00875 Bda13g00106 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00875 Bda-Chr3:7585006 Bda11g01097 Bda-Chr11:10752029 5.85E-28 dispersed
Bda11g00591 Bda-Chr11:6035569 Bda03g00875 Bda-Chr3:7585006 1.33E-178 wgd
Bda13g00106 Bda-Chr13:1467741 Bda03g00875 Bda-Chr3:7585006 1.46E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15702 PF03638 TCR 9.00E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00875 - - qsu:112021049 595.89