Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00886 ATGTTTATTCTTCTTGGTTGTCATTCTTACACAGATAAACTGCAATCACCATCTCAAATTGCTCTACCAACAAATCAAGTTGCAACGCGGAGGCACGTTTGGATCAGCTGTGTATCATTAGTTTCTTTAGATTTCAACTTTGGAAAACGATCACAAGCATTGGCAGAAGATAAATCAAATGGTCAGCGGGAAGAAGACGAAAGCGGAGTTTTTGGGGCCATCAAAACATTATTCGATCCCAATGAAAAAACAAAATCCGGAAAAGTACTGCCAAAGGATTATTTGAATGCAGCTAGACAAGTAGTGAAGACGCTAAGAGAGTCGCTAAACGAAGACCCCGCAGACAATGCAAAATTTAGACGAACTGCAGATGGGGCAAAAGAGTCTATTCGAGATTATTTGAGTAAATGGAGAGGGCAAGAGATGGTTGTCAAAGAGGAATCTTATATAGAAATAGAGAAGGCCATAAGAACATTGGCCGGGTTCTACTCAAAGGCAGGTCCTTCTGCTAGATTGCCAGAAGAGGTGAAGTCTGAAATACTAAAAGATTTGAATGAAGCTGAACAATTTTTGTAG 576 39.93 MFILLGCHSYTDKLQSPSQIALPTNQVATRRHVWISCVSLVSLDFNFGKRSQALAEDKSNGQREEDESGVFGAIKTLFDPNEKTKSGKVLPKDYLNAARQVVKTLRESLNEDPADNAKFRRTADGAKESIRDYLSKWRGQEMVVKEESYIEIEKAIRTLAGFYSKAGPSARLPEEVKSEILKDLNEAEQFL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7636440 7637098 + Bda016877.1 Bda03g00886 4145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00886 191 Hamap Photosystem II lipoprotein Psb27 [psb27]. 65 191 IPR025585 GO:0009523|GO:0010206|GO:0010207
Bda03g00886 191 Pfam Photosystem II Pbs27 30 191 IPR025585 GO:0009523|GO:0010206|GO:0010207
Bda03g00886 191 PANTHER PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC 23 191 IPR025585 GO:0009523|GO:0010206|GO:0010207
Bda03g00886 191 Gene3D Photosystem II Pbs27 83 191 IPR038450 -
Bda03g00886 191 PANTHER PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTIC 23 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00886 - - - vri:117914303 221.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00886 Bda-Chr3:7636440 Bda14g00737 Bda-Chr14:5630394 1.27E-06 dispersed
Bda03g00885 Bda-Chr3:7633334 Bda03g00886 Bda-Chr3:7636440 9.75E-142 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g498 . Blo12g00331 Bda03g00886 . Bpe04g00830 . Bma04g00783 . . Cmo17g00221 . . . . . . . . . . . . . . Cla06g00585 Cam06g0623 Cec06g0625 Cco06g0631 Clacu06g0610 Cmu06g0603 Cre06g1371 . . Cone7ag0249 Cone4ag0243 . . . . . . . . . . . . Sed09g0756 . . . Cma17g00234 . Car17g00213 Cpe12g00197 . Bhi12g01708 Tan06g2521 Cmetu01g0541 . . . . . . . . . . . Lsi09g01319 . . Cme01g01565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007720 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00886 Bda_Chr03 FPKM 18.441574 22.271517 15.970148 14.842931 33.675186 26.317064 32.501717 10.318334 11.383732