Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00898 ATGAGTACAAACCAGGCAGCCAATAGCAGCGCCGGATCAGGCGGCAGTGGTAGCTCCGGATCAGGCGGCGGAGGTCCTTGCGGAGCTTGTAAGTTTCTGCGCAGAAAGTGCGTGCAGGGTTGCATATTCGCGCCGTACTTCGATTCAGAGCAAGGCGCCGCCCATTTCGCAGCGGTTCACAAGGTGTTCGGCGCAAGCAATGTGTCCAAGCTCCTCCTGCATCTTCCAGTCAACAAGCGACTCGATGCTGTCATAACCATTTGTTACGAGGCTCAAGCTCGCTTAAGAGATCCTGTTTATGGCTGCGTCTCTCACATCTTTGCCCTTCAACAGCAGGTAAATTATTTTAATCTAATCTAA 360 52.22 MSTNQAANSSAGSGGSGSSGSGGGGPCGACKFLRRKCVQGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHLPVNKRLDAVITICYEAQARLRDPVYGCVSHIFALQQQVNYFNLI 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7849120 7849479 + Bda016893.1 Bda03g00898 4157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00898 119 Pfam Lateral organ boundaries (LOB) domain 26 115 IPR004883 -
Bda03g00898 119 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 114 - -
Bda03g00898 119 MobiDBLite consensus disorder prediction 1 25 - -
Bda03g00898 119 ProSiteProfiles LOB domain profile. 25 119 IPR004883 -
Bda03g00898 119 MobiDBLite consensus disorder prediction 1 20 - -
Bda03g00898 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00898 Bda-Chr3:7849120 Bda10g00531 Bda-Chr10:39045475 8.40E-52 dispersed
Bda05g00845 Bda-Chr5:56998318 Bda03g00898 Bda-Chr3:7849120 1.55E-49 transposed
Bda03g00898 Bda-Chr3:7849120 Bda08g00229 Bda-Chr8:2288572 7.02E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15704 PF03195 LOB 1.50E-36 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00898 K21994 - tcc:18614288 188.734