Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00898 | ATGAGTACAAACCAGGCAGCCAATAGCAGCGCCGGATCAGGCGGCAGTGGTAGCTCCGGATCAGGCGGCGGAGGTCCTTGCGGAGCTTGTAAGTTTCTGCGCAGAAAGTGCGTGCAGGGTTGCATATTCGCGCCGTACTTCGATTCAGAGCAAGGCGCCGCCCATTTCGCAGCGGTTCACAAGGTGTTCGGCGCAAGCAATGTGTCCAAGCTCCTCCTGCATCTTCCAGTCAACAAGCGACTCGATGCTGTCATAACCATTTGTTACGAGGCTCAAGCTCGCTTAAGAGATCCTGTTTATGGCTGCGTCTCTCACATCTTTGCCCTTCAACAGCAGGTAAATTATTTTAATCTAATCTAA | 360 | 52.22 | MSTNQAANSSAGSGGSGSSGSGGGGPCGACKFLRRKCVQGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHLPVNKRLDAVITICYEAQARLRDPVYGCVSHIFALQQQVNYFNLI | 119 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7849120 | 7849479 | + | Bda016893.1 | Bda03g00898 | 4157 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00898 | 119 | Pfam | Lateral organ boundaries (LOB) domain | 26 | 115 | IPR004883 | - | |
Bda03g00898 | 119 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 114 | - | - | |
Bda03g00898 | 119 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Bda03g00898 | 119 | ProSiteProfiles | LOB domain profile. | 25 | 119 | IPR004883 | - | |
Bda03g00898 | 119 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Bda03g00898 | 119 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 1 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00898 | Bda-Chr3:7849120 | Bda10g00531 | Bda-Chr10:39045475 | 8.40E-52 | dispersed | |
Bda05g00845 | Bda-Chr5:56998318 | Bda03g00898 | Bda-Chr3:7849120 | 1.55E-49 | transposed | |
Bda03g00898 | Bda-Chr3:7849120 | Bda08g00229 | Bda-Chr8:2288572 | 7.02E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15704 | PF03195 | LOB | 1.50E-36 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00898 | K21994 | - | tcc:18614288 | 188.734 |