Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00908 ATGTCTCTCTTCTCTATTTCTTCCCCTTCTACTTCGACTGCCTATTCTCTCTGCAGTTCTACTGCTACTTCGTCTTCTTCTTCCTCTCATCTAAAGCTCGGTTGTACTTTTCTTTCCCTCCCTCTCAGGGCCGAGCGTATCCGCAGAAATCCGTTTATCTTGAAATTCTGCGGAAAAATAAATAAATCCAACAATTATGGGGTGAAGATGATGAGTATGGAAGCTGGCATTGGAGTGATGGCTACTAAGCTTGGGATGATGAGCTTCTTTGAGCCGGATGGGAAGGTTGTTCCGGTTACTGTCGTAGGCTTTAAGGAAGGTAATATTGTTACTCAGGTTAAGACACAGGCAACAGATGGGTATGATTCTGTTCAGATTGGTTATCGAAGGGTTAGAGACCGGAAGCTCACTAAGCCGGAACTAGGTCACCTCGAGAAGGCTGGCGCTATTCCCATGCGTCATCTCCAGGAGTTCCGCTTGCAATCAGTTGAGGGATTTGAGCCGAATCAGCGGTTAGTGTTTGAGGAAATATTTAAGGAAGGGGATCTTGTCGATGTCTCTGGCACCACCATTGGAAAGGGTTTTCAAGGTGGTATCAAGCGGCACAACTTCAAGAGGGGTCCAATGACCCATGGTTCTAAAAGTCATAGAGCGCTTGGATCAATTGGAGCGGGAACCACCCCTGGCCGTGTGTACAAAGGAAAGAAGATGCCTGGCAGGATGGGAGGAACCAAGACAAAGATCAGGAAGCTCAAAATTGTCAAAATTGACAATGATCTTAACGTCGTGATGATCAAAGGCGCTCTACCTGGTAAGCCTGGAAATCTTCTCCGAATAGCTCCGGCCAAGATAGTAGGGAAGAACATTCCAAAAAATTAG 879 46.3 MSLFSISSPSTSTAYSLCSSTATSSSSSSHLKLGCTFLSLPLRAERIRRNPFILKFCGKINKSNNYGVKMMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTQATDGYDSVQIGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLQSVEGFEPNQRLVFEEIFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKIDNDLNVVMIKGALPGKPGNLLRIAPAKIVGKNIPKN 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7926248 7929003 + Bda016904.1 Bda03g00908 4167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00908 292 SUPERFAMILY Translation proteins 77 288 IPR009000 -
Bda03g00908 292 PANTHER 50S RIBOSOMAL PROTEIN L3 71 291 IPR019927 GO:0003735|GO:0005840|GO:0006412
Bda03g00908 292 Hamap 50S ribosomal protein L3 [rplC]. 76 283 IPR019927 GO:0003735|GO:0005840|GO:0006412
Bda03g00908 292 ProSitePatterns Ribosomal protein L3 signature. 178 201 IPR019926 -
Bda03g00908 292 Gene3D - 109 168 - -
Bda03g00908 292 Gene3D Translation factors 204 284 - -
Bda03g00908 292 TIGRFAM L3_bact: 50S ribosomal protein uL3 78 279 IPR019927 GO:0003735|GO:0005840|GO:0006412
Bda03g00908 292 PANTHER 50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC 71 291 - -
Bda03g00908 292 Pfam Ribosomal protein L3 171 258 IPR000597 GO:0003735|GO:0005840|GO:0006412
Bda03g00908 292 MobiDBLite consensus disorder prediction 207 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00908 K02906 RP-L3, MRPL3, rplC; large subunit ribosomal protein L3 - zju:107423329 436.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00908 Bda-Chr3:7926248 Bda04g01154 Bda-Chr4:62302648 2.85E-49 dispersed
Bda03g00908 Bda-Chr3:7926248 Bda03g00914 Bda-Chr3:8077582 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g408 . . Bda03g00908 . Bpe04g00852 Bpe14g01165 Bma04g00803 . Cmo08g01152 Cmo17g00268 . . . . . . . . . . . . . . Cla06g00533 Cam06g0575 Cec06g0572 Cco06g0580 Clacu06g0562 Cmu06g0556 Cre06g1324 . . Cone7ag0201 Cone4ag0194 . . Chy11g01442 . . Blo07g00199 . . . . . . . . . Cma08g01181 Cma17g00281 Car08g01057 Car17g00256 Cpe12g00234 Cpe17g00115 Bhi12g01782 . . . . . . . . . . . . . Lsi09g01371 . . Cme11g01947
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006519 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00908 Bda_Chr03 FPKM 4.730968 5.169757 20.957409 24.474878 28.257113 28.240568 28.441929 44.592926 45.572849