Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00962 ATGGGGAGAATGGTGGGTACGTATCAGCTTGGTGTAATGGTGGTGATTCTGGTTTTGTGCGTAGCGTCTCTGCCTTTTAGTTTGGGATCATCTACAGAGCAACTGAGCTCAAGAGAATGTGAAGATCTAGGTTTTTCAGGATTAGCACTTTGCTCCGATTGCCACACTCTAGCTGAGTACATCAAAGATCAAGATCTAGTATCAGACTGTATGAAGTGCTGCACAGAGGATTCCGAGGACGAGTTGAGCAAGATAACGTATTCGGGAGCTATACTGGAGGTGTGCATGAGGAAACTTGTATTTTATCCGGAGATTGTTAGCTTCATCGAAGAACAGAAGGATCAATTTCCCTTTGTCAAGGTTGAATACAGTTTCAACTCTGCACCAAAGCTACTCATGCTAGATAATGCAGGTCAGCAAAAAGAAACCATAAGGATCGACAATTGGAAACGGGAACACATAGTTCAGTTCTTGCGAGAGAAGGTGAAGCCCACCTCAGCAATCTGA 507 43.98 MGRMVGTYQLGVMVVILVLCVASLPFSLGSSTEQLSSRECEDLGFSGLALCSDCHTLAEYIKDQDLVSDCMKCCTEDSEDELSKITYSGAILEVCMRKLVFYPEIVSFIEEQKDQFPFVKVEYSFNSAPKLLMLDNAGQQKETIRIDNWKREHIVQFLREKVKPTSAI 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8713036 8714549 + Bda016971.1 Bda03g00962 4221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00962 168 Gene3D - 89 162 IPR038219 -
Bda03g00962 168 SUPERFAMILY Thioredoxin-like 73 164 IPR036249 -
Bda03g00962 168 Pfam Sep15/SelM redox domain 90 162 IPR014912 -
Bda03g00962 168 PANTHER SELENOPROTEIN F 12 166 IPR039992 -
Bda03g00962 168 PANTHER BNAANNG25340D PROTEIN 12 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00962 - - - zju:112488752 254.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00962 Bda08g00169 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00962 Bda-Chr3:8713036 Bda08g00169 Bda-Chr8:1560755 1.46E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1322 Blo01g00181 Blo12g00273 Bda03g00962 Bda08g00169 Bpe04g00890 . . Bma05g01153 Cmo08g00190 Cmo17g00602 . . . . . . . . . . . . . . Cla06g00102 Cam06g0113 Cec06g0114 Cco06g0113 Clacu06g0115 Cmu06g0113 Cre06g0883 Cone14ag0619 Cone15ag0627 . . . . . . . . . . Bpe05g00963 . . . Sed09g0394 . . . Cma17g00618 Car08g00169 Car17g00583 . Cpe17g01079 Bhi12g02468 Tan06g1530 Cmetu11g1399 . Hepe03g1100 . . . . . . . . . . . . Cme11g02436
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005925 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00962 Bda_Chr03 FPKM 8.878788 8.613457 5.475813 5.010627 5.033964 4.105731 3.952599 1.557215 3.38335