Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00975 ATGAAAATACAGTGTGATGTGTGCGAGAAAGCTCCGGCGACGGTGATTTGCTGCGCAGATGAGGCGGCGCTGTGCGCGAAATGTGACGTCGAAGTTCATGCAGCAAACAAGCTCGCAAGTAAGCACCAGAGGCTTCCTCTTCAATGCCTCTCCGGCAAGCTCCCCAAGTGTGACATATGCCAAGAAAAGACAGCTTTTATATTCTGTGTAGAAGATAGAGCCCTGTTTTGCGAGGATTGCGATGAGCCAATTCACTCACAGGGAAGCCTTTCAAGAAACCACCAACGATTCCTAGCTACCGGAATCCGGGTAGCACTGAGCTCAAGTTGTTCAAAGGAGATGGAAAAGAGTTCGATGGAGCCTCCAAATCAGAAGAAACAACTGCTCTCTCTGAAACTGTCCCCACAACAGTCTAATATGGATTCATCCCCTTGGACTGTCGAGGACTTCCTCCGTTTATCGGAATTTGAAACCCCCGACAAGGCAAGAAATCTACTCGCACTAATTTCACACATTTGTCAGAAAGAGCAGCTGGAGTTCGGCGAGCTTGAATGGCTGGCGGAAATGGGTATTTTTGGGGAGCAGGTTCCTCAAGAGGCAATGACAGCAGCAGAAGTTCCTGAGCTTCCAAGATCACAGCCTAGCAACATCTCATACAGACCCACCAAATCGTCACCACCTTTCAAGAAGCCTAGGATCGAGAACTTCGACGAAGACGAGGAGTACTTCATTGTTCCGGATCTTGGCTGA 750 48.93 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLPLQCLSGKLPKCDICQEKTAFIFCVEDRALFCEDCDEPIHSQGSLSRNHQRFLATGIRVALSSSCSKEMEKSSMEPPNQKKQLLSLKLSPQQSNMDSSPWTVEDFLRLSEFETPDKARNLLALISHICQKEQLEFGELEWLAEMGIFGEQVPQEAMTAAEVPELPRSQPSNISYRPTKSSPPFKKPRIENFDEDEEYFIVPDLG 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8813827 8814805 + Bda016986.2 Bda03g00975 4234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00975 249 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bda03g00975 249 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda03g00975 249 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bda03g00975 249 Gene3D Classic Zinc Finger 1 95 - -
Bda03g00975 249 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 249 - -
Bda03g00975 249 MobiDBLite consensus disorder prediction 202 232 - -
Bda03g00975 249 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 249 - -
Bda03g00975 249 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda03g00975 249 CDD Bbox1_BBX-like 5 47 - -
Bda03g00975 249 MobiDBLite consensus disorder prediction 209 223 - -
Bda03g00975 249 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Bda03g00975 249 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Bda03g00975 249 CDD Bbox1_BBX-like 56 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00975 Bda-Chr3:8813827 Bda05g00809 Bda-Chr5:56536770 3.89E-45 dispersed
Bda03g00975 Bda-Chr3:8813827 Bda08g01236 Bda-Chr8:50639497 2.07E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15712 PF00643 zf-B_box 9.00E-08 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00975 - - cit:102626697 356.295