Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00976 ATGGCTTTGACTAACGGTTCGAATGCTTCCGGCTTGATTGTTAGCTTCGGAGAGATGCTGATCGATTTTGTTCCTACCGTTTCCGGCGTCTCCTTGGCCGAAGCCCCTGGTTTTCTCAAGGCTCCAGGCGGCGCTCCGGCCAACGTTGCGATCGCCGTGAGCAGACTCGGAGGCAAAGCGGCTTTCGTCGGAAAGCTTGGAGACGATGAATTCGGTCACATGCTCGCCGGGATCTTGAAGGAAAACGGCGTCTCTGGCGACGGGATCAGCTTCGACGAGGGCGCCAGAACTGCGTTGGCGTTCGTCACTCTTCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAATCCTAGCGCCGACATGTTGCTGAAGCCGGAAGAGCTAAATTTGGAGCTGATCAGATCCGCCAAAGTGTTTCACTACGGATCCATCAGCTTGATCGTGGAGCCGTGCAGATCGGCGCATATGAAGGCTATGGAGGTGGCAAAGGAAGCCGGGGCCCTTCTCTCATACGACCCTAACCTCCGTCTACCTTTATGGCCTTCGCCTGAGGAGGCTCGCGAGCAGATCTTGAGCATATGGGACAAGGCGGAAGTTATCAAGGTTAGCGACGTTGAGCTGGAATTCCTTACCGGAAGTAACAAAATCGACGATGAATCCGCTTTGTCACTTTGGCATGATAATCTCAAGCTCCTCCTCGTCACTCTCGGCGAGCATGGCTGCAGATACTACACCAAGGCTTTCCGTGGATCTGTGGAGGCTTTCCAAGTGAAGGCAGTCGACACAACTGGAGCAGGCGACTCGTTCGTCGGTGCTTTGCTTTGCAAGATTGTCGACGACCAATCCATCCTTGAAGGATTGAATGATGGGGATGACGTCGTTGCTGGCAATAGTGACGAAGAAGATGAGGATGCTCTGCCCTTTGCTTGTTTCATTTGTAGGCAGCCATTTGTTGATCCTGTTGTAACACAATGCAAACACTATTTCTGCGAGCACTGTGCATTGAAGCATCATGCGAAAAACAAGAAATGCTTCGTTTGCAACCAGCCTACGCTTGGCATCTTCAATACAGCTCAAGAAATGAAGAAAAGGATGGCTGCAGCTGGTAAATAA 1116 52.33 MALTNGSNASGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGKAAFVGKLGDDEFGHMLAGILKENGVSGDGISFDEGARTALAFVTLRADGEREFMFYRNPSADMLLKPEELNLELIRSAKVFHYGSISLIVEPCRSAHMKAMEVAKEAGALLSYDPNLRLPLWPSPEEAREQILSIWDKAEVIKVSDVELEFLTGSNKIDDESALSLWHDNLKLLLVTLGEHGCRYYTKAFRGSVEAFQVKAVDTTGAGDSFVGALLCKIVDDQSILEGLNDGDDVVAGNSDEEDEDALPFACFICRQPFVDPVVTQCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAQEMKKRMAAAGK 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8815365 8827867 - Bda016987.1 Bda03g00976 4235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00976 371 ProSitePatterns Zinc finger RING-type signature. 326 335 IPR017907 -
Bda03g00976 371 SUPERFAMILY Ribokinase-like 13 287 IPR029056 -
Bda03g00976 371 Pfam Zinc finger, C3HC4 type (RING finger) 310 352 - -
Bda03g00976 371 SUPERFAMILY RING/U-box 310 354 - -
Bda03g00976 371 Pfam pfkB family carbohydrate kinase 12 286 IPR011611 -
Bda03g00976 371 PANTHER BNAA04G18320D PROTEIN 18 286 - -
Bda03g00976 371 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 262 275 IPR002173 GO:0016773
Bda03g00976 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 368 IPR013083 -
Bda03g00976 371 SMART ring_2 311 348 IPR001841 -
Bda03g00976 371 PANTHER HEXOKINASE FAMILY MEMBER 18 286 - -
Bda03g00976 371 PRINTS Ribokinase signature 38 57 IPR002139 GO:0016301
Bda03g00976 371 PRINTS Ribokinase signature 233 244 IPR002139 GO:0016301
Bda03g00976 371 CDD RING-HC_RNF113A_B 309 349 - -
Bda03g00976 371 CDD bac_FRK 12 275 - -
Bda03g00976 371 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 43 67 IPR002173 GO:0016773
Bda03g00976 371 Gene3D - 10 310 IPR029056 -
Bda03g00976 371 ProSiteProfiles Zinc finger RING-type profile. 311 349 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00976 K00847 E2.7.1.4, scrK; fructokinase [EC:2.7.1.4] - pvy:116135378 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01117 Bda-Chr1:46014879 Bda03g00976 Bda-Chr3:8815365 6.21E-134 dispersed
Bda03g00976 Bda-Chr3:8815365 Bda07g01844 Bda-Chr7:35789984 8.47E-128 dispersed
Bda03g00976 Bda-Chr3:8815365 Bda08g00156 Bda-Chr8:1453996 5.14E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00976 Bda_Chr03 FPKM 0.0 0.0 3.034077 2.351909 150.139633 125.436958 142.940262 0.0 0.0