Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00991 ATGGGTTTTCCGGTCGGGTATACGGAGGTGTTCTTCCCCTATCTCTTTCTTCATCTACTTTCTCTTCTTGGATACATCAGAAGTCTCATTTCGTCTCTGTTTCACCTTCTGGGTCTCTCTGATTTCCTCGAAACAGATGCCGTTTGGCCCGAAATGCAGAGCCGAATACCCGATTCTCCCTCAGTTTCGGCGCTCCTGATTCGAGAATTGCTACCAGTCATCAAGTTTTCGGAGCTTACAGCAGTCTCCGGCGAAGCAGAGTCACTGGAGAGCTGCGCAGTTTGTCTCTACGAATTTGAAGATGGGGCGGAAATCAGAAGATTAACAAACTGTATGCACATTTTTCACAGAGACTGTTTAGACCGCTGGATGGATCATGATCAGAAAACATGTCCTCTTTGTAGGACGCCATTTTTGGCTGATGAGATGCAGAGAGAGTTCAATCAACGCCTGTGGGCCGCTACCGGAGCATCTGATTTTTACGGTGAATACAGCTCGGTCTGA 504 47.62 MGFPVGYTEVFFPYLFLHLLSLLGYIRSLISSLFHLLGLSDFLETDAVWPEMQSRIPDSPSVSALLIRELLPVIKFSELTAVSGEAESLESCAVCLYEFEDGAEIRRLTNCMHIFHRDCLDRWMDHDQKTCPLCRTPFLADEMQREFNQRLWAATGASDFYGEYSSV 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8976749 8977252 - Bda017006.1 Bda03g00991 4250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00991 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 165 - -
Bda03g00991 167 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Bda03g00991 167 PANTHER BRH1 RING FINGER PROTEIN 1 165 - -
Bda03g00991 167 SMART ringv_2 91 135 IPR011016 GO:0008270
Bda03g00991 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 139 IPR013083 -
Bda03g00991 167 SMART ring_2 92 134 IPR001841 -
Bda03g00991 167 Pfam Ring finger domain 91 135 IPR001841 -
Bda03g00991 167 SUPERFAMILY RING/U-box 74 142 - -
Bda03g00991 167 CDD RING-H2 92 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00991 Bda-Chr3:8976749 Bda08g00511 Bda-Chr8:5180809 1.08E-47 dispersed
Bda07g00159 Bda-Chr7:1971248 Bda03g00991 Bda-Chr3:8976749 4.20E-18 transposed
Bda03g00991 Bda-Chr3:8976749 Bda08g00140 Bda-Chr8:1319207 1.05E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00991 K16281 - cpap:110820950 263.848