Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01027 ATGAATGAACTTTCTTCACCCGAAACCCCCATTAACAGCCACGAGAAGCTTGAGTCCATAGACTTATCGTTGCGAATCGACAGCGACATGGGCGGGGATGTCAATGGAGCTCGAAGCTATGGCCATGGAGGTTGCAGCGAAAGAGAACACATGTTTGATAAAGTAGTGACTCCCAGCGATGTTGGAAAGCTAAATCGTTTAGTAATTCCGAAGCAACACGCAGAGAAATACTTCCCCATCGATTCTTCAACAAATGAAAAGGGTTTGATTCTGAATTTTGAAGATAGAAACGGAAAATCATGGCGATTTCGTTACTCTTACTGGAACAGTAGCCAGAGCTACGTGATGACAAAAGGATGGAGTAGGTTTGTGAAGGAGAAGAAGCTAGACGCTGGGGATGTCGTTTCTTTCGAACGGGGAGTGGGAGAGGTTGGAAAGCACCGTCTCTTCATAGACTGGCGGCGCCGCCCAGATGCGCCACCGAATCTGGCGTCGCTCGTTCATCTTCCTCAGTCTATGAGATGGGGTAGTAGACAGTTGATTCCTCCATCAATGGCGTCGCCTTATCCTCATCCGTACCGCCATTTTCAAAACCTTAATTACGGTACGATCAATCCGTCTTACTATCAGAGAGGAGCTTCCGACCACTTCAATGGAGGAAGCTTCGAATCGGGTTCTGTTTATTACTTAAGGCCGTCTTCTTCTTACGCCATCGGAGCACTGCAACAAGGTGGGGAAGCTGCTCCAATGGTGATCGATTCAGTACCAGTAGCCCACCAAGGAAAAGCTAAACCTAAACGCCTAAGACTGTTTGGTGTGAATTTGGAGTGTCCAGTACCAGAAGAACCCATCAGTAATCCTCATTTCGCAAGTTCCTCTTCAGTTCCTTATGTTCAATTGCGGCCGCCATTTTCAACTGATTTCTCAGCAAGAGGAAAAGGTTCGTCCTCGTTCGATTGGAATCTGCCATGA 972 47.22 MNELSSPETPINSHEKLESIDLSLRIDSDMGGDVNGARSYGHGGCSEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPIDSSTNEKGLILNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFERGVGEVGKHRLFIDWRRRPDAPPNLASLVHLPQSMRWGSRQLIPPSMASPYPHPYRHFQNLNYGTINPSYYQRGASDHFNGGSFESGSVYYLRPSSSYAIGALQQGGEAAPMVIDSVPVAHQGKAKPKRLRLFGVNLECPVPEEPISNPHFASSSSVPYVQLRPPFSTDFSARGKGSSSFDWNLP 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9739224 9740195 + Bda017055.1 Bda03g01027 4286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01027 323 SUPERFAMILY DNA-binding pseudobarrel domain 48 158 IPR015300 -
Bda03g01027 323 ProSiteProfiles B3 DNA-binding domain profile. 52 157 IPR003340 GO:0003677
Bda03g01027 323 CDD B3_DNA 50 139 IPR003340 GO:0003677
Bda03g01027 323 SMART B3_2 52 157 IPR003340 GO:0003677
Bda03g01027 323 Pfam B3 DNA binding domain 52 156 IPR003340 GO:0003677
Bda03g01027 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 37 289 IPR044800 GO:0003700
Bda03g01027 323 Gene3D - 45 162 IPR015300 -
Bda03g01027 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 37 289 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01027 Bda11g00402 CCT
Bda03g01027 Bda11g00402 ECH
Bda03g01027 Bda08g00078 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01027 Bda-Chr3:9739224 Bda03g01650 Bda-Chr3:55852070 1.59E-51 dispersed
Bda07g00161 Bda-Chr7:1999022 Bda03g01027 Bda-Chr3:9739224 5.29E-76 transposed
Bda11g00402 Bda-Chr11:4346008 Bda03g01027 Bda-Chr3:9739224 1.87E-64 transposed
Bda03g01027 Bda-Chr3:9739224 Bda08g00078 Bda-Chr8:721686 4.36E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15718 PF02362 B3 4.80E-30 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01027 - - vvi:100259130 347.051