Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01053 ATGGATTTGTACGGAATTCCCTCCGTTTCATCAGAATGCTTCGCCATTGACGACCTCCTTGATGTCCCCAATGATGAATTCTTCTCCACTTCCTCCTGCGCTTCTTCCACCATTTCTTCCGCTGATCTCCGTCGCACCCACTCTCCTTTACCCTCGATTCCTTTTGCAGGCCACAATCCGACCTTGTTTTCTCCTCACTTTGATTTCACCGACGGCCTTTACGTCCCTAACGACGAGGTGGCGGAGCTCGAATGGCTTTCCCAGTTCGTTGATGATTCTTTTTCGGACTTCAATTTCACGGAAGGAACCGGAGAAAAATCTCTCCAACCGGAAAATTCATCATCATCCGGTAAAACACAACGAAAGTGCTCAGGAGCGTTGTCTGTACAGGTGATCTCGCCAGAGCCCAAACCAATGTCCACCAGAAAGCTCAAATCGAGAACAGAAACTGTCCCGATGAACTTTTCGTTTGCTTCTACATGTTCCTCGATGATAAAAAACTCGCCGGGAGGCCGGAAATGCAGCCACTGTTCGTCGGAGAAGACTCCGCAATGGCGAACAGGCCCACTAGGACCTAAAACGCTGTGCAATGCCTGCGGTGTGCGATTCAAGTCGGGTCGACTTGTACCCGAATACAGACCCGCAGCAAGCCCAACTTTTGTGCTCACCCAGCACTCAAACTCTCACCGGAAAGTTCTGGAGCTCCGCCGCCAAAAAGAGCTCTCACGGCAGCAACCGCCACAGCAGATGGAGGAGAAATTCTATGCTCAAGCACACGACTTCCAAGTTTGCTGA 795 50.82 MDLYGIPSVSSECFAIDDLLDVPNDEFFSTSSCASSTISSADLRRTHSPLPSIPFAGHNPTLFSPHFDFTDGLYVPNDEVAELEWLSQFVDDSFSDFNFTEGTGEKSLQPENSSSSGKTQRKCSGALSVQVISPEPKPMSTRKLKSRTETVPMNFSFASTCSSMIKNSPGGRKCSHCSSEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVLELRRQKELSRQQPPQQMEEKFYAQAHDFQVC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10336871 10337806 + Bda017090.1 Bda03g01053 4312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01053 264 PANTHER GATA TRANSCRIPTION FACTOR 1 264 - -
Bda03g01053 264 PANTHER GATA TRANSCRIPTION FACTOR 1 264 - -
Bda03g01053 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 231 - -
Bda03g01053 264 PIRSF Txn_fac_GATA_plant 1 262 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bda03g01053 264 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
Bda03g01053 264 SMART GATA_3 168 218 IPR000679 GO:0006355|GO:0043565
Bda03g01053 264 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Bda03g01053 264 Gene3D - 170 255 IPR013088 GO:0006355|GO:0008270
Bda03g01053 264 MobiDBLite consensus disorder prediction 101 127 - -
Bda03g01053 264 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Bda03g01053 264 CDD ZnF_GATA 173 220 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01053 - - - vri:117931666 243.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01053 Bda08g00019 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01053 Bda-Chr3:10336871 Bda10g00830 Bda-Chr10:42690265 3.32E-50 dispersed
Bda03g01053 Bda-Chr3:10336871 Bda04g00882 Bda-Chr4:58587324 1.12E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g383 Blo01g00314 . Bda03g01053 Bda08g00019 . Bpe05g01125 Bma04g00965 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0515 Cone15ag0541 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g00433 . 75 291 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.8e-58 221.9
Bda09g00660 . 76 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 4.0e-49 192.2
Bda09g00212 . 74 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 9.0e-49 191.0
Bda03g01053 BCT 1 240 C2C2-Gata Transcription Factor Family AT3G60530 51.4 3.7e-52 201.8
Bda04g00030 CCT,ECH 38 205 C2C2-Gata Transcription Factor Family AT5G66320 58.2 5.8e-43 171.8
Bda14g00992 . 2 173 C2C2-Gata Transcription Factor Family AT5G66320 55.7 4.1e-41 165.6
Bda14g00992 . 8 173 C2C2-Gata Transcription Factor Family AT3G51080 60.5 2.9e-41 166.0
Bda04g00030 CCT,ECH 38 185 C2C2-Gata Transcription Factor Family AT3G51080 63.9 7.2e-40 161.4
Bda06g00001 . 1 328 C2C2-Gata Transcription Factor Family AT4G17570 57.2 3.9e-91 332.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018084 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15723 PF00320 GATA 9.50E-16 CL0167 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01053 Bda_Chr03 FPKM 13.860387 15.615147 13.424956 13.276491 23.332455 22.912132 23.505638 4.269194 4.00843