Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01053 ATGGATTTGTACGGAATTCCCTCCGTTTCATCAGAATGCTTCGCCATTGACGACCTCCTTGATGTCCCCAATGATGAATTCTTCTCCACTTCCTCCTGCGCTTCTTCCACCATTTCTTCCGCTGATCTCCGTCGCACCCACTCTCCTTTACCCTCGATTCCTTTTGCAGGCCACAATCCGACCTTGTTTTCTCCTCACTTTGATTTCACCGACGGCCTTTACGTCCCTAACGACGAGGTGGCGGAGCTCGAATGGCTTTCCCAGTTCGTTGATGATTCTTTTTCGGACTTCAATTTCACGGAAGGAACCGGAGAAAAATCTCTCCAACCGGAAAATTCATCATCATCCGGTAAAACACAACGAAAGTGCTCAGGAGCGTTGTCTGTACAGGTGATCTCGCCAGAGCCCAAACCAATGTCCACCAGAAAGCTCAAATCGAGAACAGAAACTGTCCCGATGAACTTTTCGTTTGCTTCTACATGTTCCTCGATGATAAAAAACTCGCCGGGAGGCCGGAAATGCAGCCACTGTTCGTCGGAGAAGACTCCGCAATGGCGAACAGGCCCACTAGGACCTAAAACGCTGTGCAATGCCTGCGGTGTGCGATTCAAGTCGGGTCGACTTGTACCCGAATACAGACCCGCAGCAAGCCCAACTTTTGTGCTCACCCAGCACTCAAACTCTCACCGGAAAGTTCTGGAGCTCCGCCGCCAAAAAGAGCTCTCACGGCAGCAACCGCCACAGCAGATGGAGGAGAAATTCTATGCTCAAGCACACGACTTCCAAGTTTGCTGA 795 50.82 MDLYGIPSVSSECFAIDDLLDVPNDEFFSTSSCASSTISSADLRRTHSPLPSIPFAGHNPTLFSPHFDFTDGLYVPNDEVAELEWLSQFVDDSFSDFNFTEGTGEKSLQPENSSSSGKTQRKCSGALSVQVISPEPKPMSTRKLKSRTETVPMNFSFASTCSSMIKNSPGGRKCSHCSSEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVLELRRQKELSRQQPPQQMEEKFYAQAHDFQVC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10336871 10337806 + Bda017090.1 Bda03g01053 4312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01053 264 PANTHER GATA TRANSCRIPTION FACTOR 1 264 - -
Bda03g01053 264 PANTHER GATA TRANSCRIPTION FACTOR 1 264 - -
Bda03g01053 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 231 - -
Bda03g01053 264 PIRSF Txn_fac_GATA_plant 1 262 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bda03g01053 264 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
Bda03g01053 264 SMART GATA_3 168 218 IPR000679 GO:0006355|GO:0043565
Bda03g01053 264 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Bda03g01053 264 Gene3D - 170 255 IPR013088 GO:0006355|GO:0008270
Bda03g01053 264 MobiDBLite consensus disorder prediction 101 127 - -
Bda03g01053 264 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Bda03g01053 264 CDD ZnF_GATA 173 220 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01053 Bda08g00019 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01053 Bda-Chr3:10336871 Bda10g00830 Bda-Chr10:42690265 3.32E-50 dispersed
Bda03g01053 Bda-Chr3:10336871 Bda04g00882 Bda-Chr4:58587324 1.12E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15723 PF00320 GATA 9.50E-16 CL0167 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01053 - - vri:117931666 243.047