Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01076 ATGGCTGAGTTTACGAGGGAGAGAGACTGGGATCAGTTTCATAGCCCTAGAAATCTTCTTTTGGCTCTGGTGGGTGAAGTGGGAGAGTTGTCTGAGATATTTCAATGGAAAGGAGAGGTGGCAAGAGGGCTGGATGACTGGAAAGACGAAGAGAAACAACACTTGGGAGAGGAGCTATCGGACGTCTTGCTCTATCTCGTTAGACTCGCTGACGTATGCGGCATCGATCTAGGCAAAGCTGCTCTTCGTAAGCTGGAGCTCAACGCCGCAAAATACCCAGTGCAGCAAAGCAAAGGGTCTTCCAAAAAGTACACCCAAATCAATGAAATATCCACCCATGGCTCTGGTGCGGTTGCAGACCCTTCTTCCAACAGTGACAGCAATGGCCCCAGTGATGGCCTCTGA 405 50.12 MAEFTRERDWDQFHSPRNLLLALVGEVGELSEIFQWKGEVARGLDDWKDEEKQHLGEELSDVLLYLVRLADVCGIDLGKAALRKLELNAAKYPVQQSKGSSKKYTQINEISTHGSGAVADPSSNSDSNGPSDGL 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10811009 10812454 - Bda017120.1 Bda03g01076 4335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01076 134 Gene3D - 1 98 - -
Bda03g01076 134 MobiDBLite consensus disorder prediction 93 134 - -
Bda03g01076 134 Pfam MazG-like family 26 106 IPR025984 GO:0009143|GO:0047429
Bda03g01076 134 CDD NTP-PPase_RS21-C6_like 1 88 IPR025984 GO:0009143|GO:0047429
Bda03g01076 134 SUPERFAMILY all-alpha NTP pyrophosphatases 3 126 - -
Bda03g01076 134 PANTHER - 1 110 - -
Bda03g01076 134 PANTHER DCTP PYROPHOSPHATASE 1 1 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01076 K16904 DCTPP1; dCTP diphosphatase [EC:3.6.1.12] - qsu:112009978 197.208
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01076 Bda11g00639 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01076 Bda-Chr3:10811009 Bda10g00631 Bda-Chr10:40355796 9.99E-57 dispersed
Bda08g00063 Bda-Chr8:519272 Bda03g01076 Bda-Chr3:10811009 1.66E-78 transposed
Bda11g00639 Bda-Chr11:6368547 Bda03g01076 Bda-Chr3:10811009 1.15E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g731 Blo01g00274 Blo12g00152 Bda03g01076 . Bpe04g00999 . Bma04g00990 Bma05g01219 . . . Cma14g01820 . Car14g01632 . . Cpe03g01524 Bhi01g00714 . . . Hepe05g1666 . . . . . . . . . Cone14ag0159 Cone15ag0170 . . Lsi05g01743 . . Cme06g00479 . . Bda11g00639 . Bpe05g01074 Bpe13g00550 . Bma06g01606 . . Cmo14g01860 . . . . . . . . . . . . . Cla05g00435 Cam05g0473 Cec05g0482 Cco05g0482 Clacu05g0470 Cmu05g0448 Cre05g0510 . Csa03g01197 Chy06g00461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002028 4 1 2 4 4 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 2 1 2 3 2 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01076 Bda_Chr03 FPKM 103.709091 96.959549 94.102592 98.140656 92.297913 88.319061 123.696709 98.091942 106.642693