Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01077 ATGTCGACGAAGAGCCATACAGAAATCCCTGGTGAACCGACTTCCACCGGAAAAGCTGTTCTTGAAACGGCCACCGCCGCCATTCAAAGTTTCCGTCCCGTTAATCAGATTCACCAGCATCTCTGCGCGTTTCATTTCTACGCCTACGACATGACGAGGCAAGTGGAGGCGCACCACTATTGTGCGCACCAGAACGAGGAAATGCGGCAGTGCCTCATCTACGACAGCCCCAACGCCGACGCGCGCCTTATAGGGATCGAGTACATCGTATCGGAAAACCTCTTCCTGACGCTGCCGGACGAGGAGAAGCGTCTCTGGCACTCTCACGAGTACGAGGTGAAGAGCGGGATACTGTTCATGCCGAAAGTTCCGGCTCCGATCCAGCTACAGGATCTCAACAAAATCTGCAAAACGTACGGAAAAGTCTTCCATTTTTGGCAGGTGGACAAGGGCGACAAGCTGCCATTAGGACTTCCTCAGATCATGATGTCCATCACCGGAGACGGCCAGGTCGATGAAAATCTCGTCCAAGACGTTGAAAGGCGTTACGATGTATCGATGGAGAAGGAGAGAGAGAAGAGAGGTTACATGACGGGGCCTGAACATGGAATCCATCCATTGGCAAATGGAGGAGGGAGTGGGCTCAGAACTGAGCTCCGAGAAGTCCATGCAACTCCCAGCCGGGTCTTCGTTTGA 696 53.3 MSTKSHTEIPGEPTSTGKAVLETATAAIQSFRPVNQIHQHLCAFHFYAYDMTRQVEAHHYCAHQNEEMRQCLIYDSPNADARLIGIEYIVSENLFLTLPDEEKRLWHSHEYEVKSGILFMPKVPAPIQLQDLNKICKTYGKVFHFWQVDKGDKLPLGLPQIMMSITGDGQVDENLVQDVERRYDVSMEKEREKRGYMTGPEHGIHPLANGGGSGLRTELREVHATPSRVFV 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10813904 10814772 - Bda017121.1 Bda03g01077 4336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01077 231 Pfam Protein of unknown function (DUF1264) 31 197 IPR010686 -
Bda03g01077 231 PANTHER OIL BODY-ASSOCIATED PROTEIN 1A-LIKE 4 226 - -
Bda03g01077 231 PANTHER - 4 226 IPR010686 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01077 - - - fve:101299457 372.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01077 Bda-Chr3:10813904 Bda06g00962 Bda-Chr6:27001927 9.14E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1064 . . Bda03g01077 . . . Bma04g00991 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011780 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01077 Bda_Chr02 FPKM 176.644058 176.989532 246.635651 243.101486 170.874664 202.621063 187.507904 192.797043 202.217499
Bda03g01077 Bda_Chr03 FPKM 312.196136 325.106415 194.577744 185.449265 283.613464 350.935516 279.064453 224.534409 212.930328
Bda03g01077 Bda_Chr07 FPKM 328.141541 353.829712 282.13739 269.74881 280.89621 389.189514 279.981171 381.262848 369.092651