Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01080 CAGCTCACAAAGATCACTGATACATCAGCTGCCCAAGCCAGGCAAGGAAAGGACATACAAGGTATTCCATGGGATAGACTGAGTATCAACAGGGAAAAGTACAGATTGACAAGGCTTGAACAATACAGAAATTATGAGAATGTCCCTTTATCTGGAGTTTTTGTGGATAAGGAATTCAAACTGGTGGAGAAGGGGGGCAATTATTATGAGTTCTTCCATAATTCAAGATTGGTGAAACCGACTATCCTTCATTTCCAGCTTAGAAATTTGGTTTGGGCTACTTCGAAGCATGATGTCTACCTAATATCAAACTATTCAGTGATGCACTGGTCATCTTTAGCTGGCTATTTGTCGGAGACCCTTAATTTTGCAGGACATATAGCACCTACTGAGAAACATGCAGGAAGTTTAGTTGAGGGCTTTGCCCAAACTCAGGTCAGCACAATGGCCATCAAAGAGAACTTTCTGGTGGCCGGTGGTTTCCAGGGAGAGATTATTTGTAAGCGTTTGGATAAAAAGGGGGTAAGTTTTTGTGCTCGAATGACACACGAGGATAGTTCCATCACAAATGCGGTCGAAATATACGACAGCTTAAGGGGCGTGACATGTTTCATGGCGTCAAATAATGATTGCGGCGTCCGAGTATACGAAATGGAAGGCTTCCAACTTTTAAATCACTTCCATTTTCCTTGGGCAGTAAATCACACATCTGTTAGCCCGGATCGTAGGCTAATTGCTGTTGTCGGCGATCATGTCGATGGATTGCTCGTCGATTCTCAAAATGGAAAGACTATCGCAACAATGGTTGGTCATCGAGATTACTCATTTGCGACGTCATGGCACCCTGATGGACGTATCTTTGCTACCGGGGGTCAAGACAAGACTTGCCGAGTATGGGACACAAGAAACATGTCATCCCCAATCGCGATCCTCAAGAGCAATCTGGGAGCTGTTCGGTCTCTGCGCTACTCATCTGACGGTCGGTTTCTAGTCCTGGCCGAGCCTGCAGATTTCGTTCACATTTACAGCGTGGATTCAGACTACAAAAAGAGGCAAGAGATCGATTTCTTCGGGGAAATCTCAGGTGCGTCGATGAGTCCGGATGACGAGTCTCTCTATATAGGAGTCTGGGATAGAACTTACGCTAGTTTGCTTCAATACAACAAGAAGCATAACTATGGATATCTTGACTCCTACTTGTAA 1203 44.64 QLTKITDTSAAQARQGKDIQGIPWDRLSINREKYRLTRLEQYRNYENVPLSGVFVDKEFKLVEKGGNYYEFFHNSRLVKPTILHFQLRNLVWATSKHDVYLISNYSVMHWSSLAGYLSETLNFAGHIAPTEKHAGSLVEGFAQTQVSTMAIKENFLVAGGFQGEIICKRLDKKGVSFCARMTHEDSSITNAVEIYDSLRGVTCFMASNNDCGVRVYEMEGFQLLNHFHFPWAVNHTSVSPDRRLIAVVGDHVDGLLVDSQNGKTIATMVGHRDYSFATSWHPDGRIFATGGQDKTCRVWDTRNMSSPIAILKSNLGAVRSLRYSSDGRFLVLAEPADFVHIYSVDSDYKKRQEIDFFGEISGASMSPDDESLYIGVWDRTYASLLQYNKKHNYGYLDSYL 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10836574 10838856 + Bda017125.1 Bda03g01080 4339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01080 400 Pfam WD domain, G-beta repeat 263 300 IPR001680 GO:0005515
Bda03g01080 400 PANTHER - 3 399 - -
Bda03g01080 400 SUPERFAMILY WD40 repeat-like 146 380 IPR036322 GO:0005515
Bda03g01080 400 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 3 399 - -
Bda03g01080 400 SMART WD40_4 261 300 IPR001680 GO:0005515
Bda03g01080 400 SMART WD40_4 304 343 IPR001680 GO:0005515
Bda03g01080 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Bda03g01080 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 303 - -
Bda03g01080 400 Gene3D - 124 392 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01080 - - - zju:107422250 699.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01080 Bda-Chr3:10836574 Bda11g00449 Bda-Chr11:4754635 0 dispersed
Bda03g01080 Bda-Chr3:10836574 Bda04g00146 Bda-Chr4:3969533 9.08E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1084 . . Bda03g01080 . Bpe04g00995 . Bma04g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0895 Cone11ag0609 . . . . Blo02g00418 Blo07g00077 . . . . Bma02g00997 Bma06g01409 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01080 Bda_Chr03 FPKM 2.241935 2.195346 1.5908 1.70161 1.16856 1.110335 0.392759 2.678478 2.33425