Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01082 ATGAGAGATCGGGTTGAAAGATTTGTTGTTCTTCCTTTATCATCTGGATGTGCTTCTCTTTCTAGCGTCGCTCTTGGTTCCGCCGCTTTTCCTCTCAGAAAATCGAAACCAGAATCATGCCCATCTGTTGCAAGAAGACAGGAAGGTGAAGAGAGGTCGTCCAGAGAGAAAGAGAAGAACTCTTTCGGTTTGTTGTTCGTACCAAAGTCTAACATTTCGAGTGGATTACAGAAATTGATTGGAAGCATCAAAAATTTCTCTCAATCATTCATTTACAAGAGAGAGATGGAGGAGGAAGAAGCCGAAATGGAAATTGGCTACCCGACAGATGTAAAGCACGTGACACACGTAGGATCAGATGGGTCTGCGACCAAGTGCTGGGACAACCTCAATCCTCCAGAAATATTCTCTTTCCCTTCATTTTCTTTCAGGCAGTTTTAA 441 43.08 MRDRVERFVVLPLSSGCASLSSVALGSAAFPLRKSKPESCPSVARRQEGEERSSREKEKNSFGLLFVPKSNISSGLQKLIGSIKNFSQSFIYKREMEEEEAEMEIGYPTDVKHVTHVGSDGSATKCWDNLNPPEIFSFPSFSFRQF 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10843743 10844408 - Bda017127.1 Bda03g01082 4341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01082 146 MobiDBLite consensus disorder prediction 33 59 - -
Bda03g01082 146 ProSiteProfiles CRIB domain profile. 105 118 IPR000095 -
Bda03g01082 146 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC4 1 144 - -
Bda03g01082 146 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC2 1 144 IPR044509 -
Bda03g01082 146 MobiDBLite consensus disorder prediction 39 59 - -
Bda03g01082 146 Pfam P21-Rho-binding domain 104 127 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01082 - - - qsu:111994191 139.813
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01082 Bda-Chr3:10843743 Bda01g00117 Bda-Chr1:17547571 5.74E-09 dispersed
Bda11g00640 Bda-Chr11:6375537 Bda03g01082 Bda-Chr3:10843743 3.94E-06 wgd
Bda03g01082 Bda-Chr3:10843743 Bda05g00862 Bda-Chr5:57113183 2.60E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1087 . . Bda03g01082 . . . Bma04g00996 . . . . . . . . . . . . . . . . . Cla08g00382 Cam08g0802 Cec08g0372 Cco08g0472 Clacu08g0515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013937 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 1 1 2 0 0 1 1 1 0 1 0 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01082 Bda_Chr03 FPKM 4.213178 4.497817 5.701038 3.121901 4.273593 5.001687 3.559055 0.244593 0.0