Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01102 ATGGCCCTTCGCCGCAGGCGCAAGTCATTTGATTTTCACTTCCTTCAAAGTCTTCTATGTTTTCTCCAGCTTTCTATTAATCGTTTCTCACTGACACTAACCAGACAGACTCATGCTCGAATTCTCGCTGGTGGATTAGAACAGGATGCCTTTCTCGCTACTAAACTCATTTCTGCTTACTCTGCGTGCGGCAGCCTGGCCGACTCACTCCGCGTTTTTCACTCCATTTCGTTGAAAAATGTGTTCTTGTGGAACTCCTTGATTAGTGGGTACGTCAAAAATAGTGCAAATGAGGAGGCGTGTGATTTGTTTTACGAGATGCAGCGATGTAGTGTTTCGCCGGATGATTATACACTGGCGACGATGGCGAAAGTGTGTAGCGAGGGGGAATTGGAAGTAGGAGAAGTGATACATGGGAAGAGCGTAAAACTTGGTTGTGATATGGATGTTGTTGTTGCTAATTCCCTGATGTCGATGTACTGCAAGTGCGGTGATTTCAAGGTTGCCCAGAAACTGTTCAATGAAATTCCTGTTAGAAACTCAGGTTCTTGGAATGTGCTTCTAGCAGGATATGCGAGCTTTTCTGATTGCAGATATCATGAGAAAATTTGGGAAATCGTAAAGCATATGCAAATTGATGGTATAAAACCTGATGCATTTACTCTGTCTATTGTTTTGCCTTTTTGTGGTGGTAATACTGAGAGATGGGATTATGGGAAAGAGCTTCATTGTTATATTTTGAAGAGGGAATTTGATTTTTATTATCGTTCGAATGTTCATCTGGGTTCTTGTCTGATTGATATGTATTCAAAGAACAATAATGTCACTATAAGTAGACGGGTTTTTGAGCAAATGAGGAGTACAAACGTTTATATTTGGGTGGCTATGATTGGAGGTTACATCCGTAATGGCGAATCAGATGAGGCGATGATTCTTTTTCGTGATATGCAAGAGAAAGACTGGACAGAACCAAGTAGAATCTCTATATTGACTATTTTGCAAGCTTGTAGCTCCCAAGGAGGCCTAATGAGTGGGAAACAAATTCACGGATTCGCTCTGAGAAAAGAATTGAACGATGATGTATCGTTGTGTAATTCTTTAATCGATATGTATTGCAAGTGTGGAAATTCAGTTTATGCAAGAAAAGTTTTTGACGATTCATCTTTTTCGAGGGACACAATCTCTTGGACAACCATGATTTCTGGGTATGGACTCCACGGACAGGGCGAGGAAGCCATTCTTTTGTTCAATCAGATGATCCACCTTCGTCTAAAACCGGACACGATAACGATAGTGGGGGTTTTATCAGCCTGTGGAAGATCGGGTTTGGTAGATGAAGGACTCAATATTTACAACAAAGTGATTAACGAATTAGGAATTGAACCAACGACCGAGATTTGCGCTACCGTGGTTGATATGGTGGCACGATCAGGACAGCTCAATCTGGCGTTAGATTTCATCAAAACAATGCCTGTCAAACCAGGGCCTACTGTTTGGGGAGCTCTTCTCACTTCTTCTTTGAATCATGGCAATTCAGAGATGCAAGAACTTGCTTATAAATTCCTCGTTGAGCTCGAACCTCAAAACCCGTCAAATTTCGTTCTGTTATCAAACTTACACGCTTCTTCGAGTAGATGGGAAGTGGTGTCCCAAGTCAGAAAAGCCATGAAACAAAGAGGTTTGAAAAAGGTAGCTGGGCGTAGTTGGATAGTCGTCAACCGCAATACTCATTGCTTCCACGTTGCAGATAAAACTCATCCTTATTCCGAGTCAATTTACGAAGTTGTTGATAGCCTTGTTTTCACTATGAAGGGATCAGAGTGTGCAATTGATTTTGAAATACTTGGTTTGACAGATCTACCATGA 1866 41.53 MALRRRRKSFDFHFLQSLLCFLQLSINRFSLTLTRQTHARILAGGLEQDAFLATKLISAYSACGSLADSLRVFHSISLKNVFLWNSLISGYVKNSANEEACDLFYEMQRCSVSPDDYTLATMAKVCSEGELEVGEVIHGKSVKLGCDMDVVVANSLMSMYCKCGDFKVAQKLFNEIPVRNSGSWNVLLAGYASFSDCRYHEKIWEIVKHMQIDGIKPDAFTLSIVLPFCGGNTERWDYGKELHCYILKREFDFYYRSNVHLGSCLIDMYSKNNNVTISRRVFEQMRSTNVYIWVAMIGGYIRNGESDEAMILFRDMQEKDWTEPSRISILTILQACSSQGGLMSGKQIHGFALRKELNDDVSLCNSLIDMYCKCGNSVYARKVFDDSSFSRDTISWTTMISGYGLHGQGEEAILLFNQMIHLRLKPDTITIVGVLSACGRSGLVDEGLNIYNKVINELGIEPTTEICATVVDMVARSGQLNLALDFIKTMPVKPGPTVWGALLTSSLNHGNSEMQELAYKFLVELEPQNPSNFVLLSNLHASSSRWEVVSQVRKAMKQRGLKKVAGRSWIVVNRNTHCFHVADKTHPYSESIYEVVDSLVFTMKGSECAIDFEILGLTDLP 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11078172 11080037 + Bda017146.1 Bda03g01102 4361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01102 621 Pfam PPR repeat 292 319 IPR002885 -
Bda03g01102 621 Pfam PPR repeat 364 386 IPR002885 -
Bda03g01102 621 Pfam PPR repeat 152 178 IPR002885 -
Bda03g01102 621 Pfam PPR repeat 263 287 IPR002885 -
Bda03g01102 621 Pfam E motif 509 570 IPR046848 -
Bda03g01102 621 Gene3D Tetratricopeptide repeat domain 235 349 IPR011990 GO:0005515
Bda03g01102 621 Gene3D Tetratricopeptide repeat domain 134 234 IPR011990 GO:0005515
Bda03g01102 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 462 IPR002885 -
Bda03g01102 621 SUPERFAMILY TPR-like 229 385 IPR011990 GO:0005515
Bda03g01102 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Bda03g01102 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Bda03g01102 621 Gene3D Tetratricopeptide repeat domain 389 598 IPR011990 GO:0005515
Bda03g01102 621 Gene3D Tetratricopeptide repeat domain 9 133 IPR011990 GO:0005515
Bda03g01102 621 PANTHER OS07G0578800 PROTEIN-RELATED 16 605 IPR045215 GO:0003723|GO:0009451
Bda03g01102 621 Pfam PPR repeat family 392 438 IPR002885 -
Bda03g01102 621 Pfam PPR repeat family 79 126 IPR002885 -
Bda03g01102 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Bda03g01102 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Bda03g01102 621 TIGRFAM PPR: pentatricopeptide repeat domain 394 428 IPR002885 -
Bda03g01102 621 TIGRFAM PPR: pentatricopeptide repeat domain 291 321 IPR002885 -
Bda03g01102 621 TIGRFAM PPR: pentatricopeptide repeat domain 83 115 IPR002885 -
Bda03g01102 621 PANTHER OS07G0436600 PROTEIN 16 605 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01102 - - - pvy:116108964 743.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01102 Bda-Chr3:11078172 Bda09g01325 Bda-Chr9:45006661 6.83E-21 dispersed
Bda03g01102 Bda-Chr3:11078172 Bda07g01450 Bda-Chr7:26960237 1.03E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g805 . . Bda03g01102 . Bpe04g00977 . Bma04g01027 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008407 1 5 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01102 Bda_Chr03 FPKM 12.189946 11.920048 15.97763 17.4911 22.392025 28.311663 23.909958 16.217945 15.690983