Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01105 ATGAAAATGTCATTATCTCACGCTATCTTATTCGTCATTTTCTTGGGCAGTCGGTGTGGGTTGTGTGATACATACTATATAGCCCATGTAAAGGATGCGTGTGCTTTTCTAGGAGATGGTATGTCCAGAATCGAAGATTTGGAACCTTTGGTTCATGGTAGAGGGAGAATTGCAACTAACTCAGATGAGATTTACTTTGGAGTTCACGAGGAGCTATTATATGCCCGTAAAATTAAGCCCGTGGAGGGTGCTCAATGGACTGGGATTGTAACAGCTATAGCAATTGAAATGCTAAAATCAGGAATGGTTGAAGCTGTTGTTTGTGTACAAAGGTTGTGCCATGAATGTTTATCCTTATACTTTTTTGGTAGTAGGACTCCAGAGGAAGTTCTAGCTGCCCGAGGAGTCAAGCCGACATTATCTCCTAATCTAAATACCCTTGCCCTCATTGAGGCTGCTGGTGTCAAGCGCCTTCTTTTCTGTGGTGTTGGCTGTCAAGTGCAAGCATTAAGATCTGTGGAGCACCATCTGAATTTGGAGAAGCTCTACGTCTTAGGCACTAATTGCGTGGACAATGGAACTCGAGAAGGCCTAGATAAGTTTCTGAAGGCAGCGAGTAGCAATCCAGACACAGTTCTTCATTACGAGTTCATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGGCATATAGAAGAGGTTCCTTATTTCTGTCTACCAGCAAATGAGTTAGTCGATGTCATTGCTCCGTCTTGCTATAGCTGTTTCGATTACACGAATGCTTTAGCTGATTTAGTAGTGGGATACATGGGAGTGCCGAAATATCCTGGTATCAGCATGACCCAACATCCACAGTATGTTACTGGTAACCGACGACCGTTCGTTATGGAGACTGTTAAGGCAGATGATGCGGCTAAGTTGGGAACCGGTCCTTCACAACCAGCACCAAAGTTCATTGGGAATTTCATAGCTTTTGTTCTAAACTTGATCGGACCGAAAGGACTGGAATTCGCTCGGTACTCGCTCGATTACCACACCATCCGTAATTATTTGCACATCAATCGAACAGCCGAAAGACACATCCCGACGTACTCGAAAAAACTGGTGGATACGTATAACCAGAATGGTGAAATTGATGGGATTCTTTGCAAGAAATGA 1161 43.58 MKMSLSHAILFVIFLGSRCGLCDTYYIAHVKDACAFLGDGMSRIEDLEPLVHGRGRIATNSDEIYFGVHEELLYARKIKPVEGAQWTGIVTAIAIEMLKSGMVEAVVCVQRLCHECLSLYFFGSRTPEEVLAARGVKPTLSPNLNTLALIEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSNPDTVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANELVDVIAPSCYSCFDYTNALADLVVGYMGVPKYPGISMTQHPQYVTGNRRPFVMETVKADDAAKLGTGPSQPAPKFIGNFIAFVLNLIGPKGLEFARYSLDYHTIRNYLHINRTAERHIPTYSKKLVDTYNQNGEIDGILCKK 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11111985 11117864 - Bda017150.1 Bda03g01105 4364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01105 386 Pfam Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 156 283 IPR007525 -
Bda03g01105 386 Pfam Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 74 147 IPR007516 -
Bda03g01105 386 PANTHER 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC 17 378 - -
Bda03g01105 386 PANTHER 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC 17 378 IPR045220 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01105 K18010 HCAR; 7-hydroxymethyl chlorophyll a reductase [EC:1.17.7.2] - jre:109002839 636.721
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g813 . . Bda03g01105 . Bpe04g00973 . Bma04g01031 . . . . Cma14g01860 . Car14g01665 . . Cpe03g01557 Bhi01g00032 . . . . . . . . . . . . . Cone14ag0198 . . . Lsi05g01788 . . Cme06g00433 . . . . . . . . . . Cmo14g01904 . . . . . . . . . . . . . Cla05g00391 Cam05g0425 Cec05g0430 Cco05g0430 Clacu05g0421 Cmu05g0403 Cre05g0465 . Csa03g01148 Chy06g00413 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011151 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01105 Bda_Chr03 FPKM 1.561628 1.721684 2.477584 2.948309 4.5707 4.926739 5.9975 2.959733 3.487307