Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01108 GTTATTAGTAGGTTGGGCTGGAGTAGAAATTATGCAGCAAAAGACATAAGATTTGGCGTGGAGGCTCGAGCTCTCATGCTTAAGGGAGTAGAGGAACTTGCCGAAGCAGTTAAAGTTACAATGGGTCCTAAGGGACGCAATGTGGTCATTGAACAAAGCTTCGGGGCTCCCAAAGTAACAAAAGATGGTGTAACCGTAGCCAAGAGCATTGAGTTCAAAGATAAAGTGAAGAATATTGGTGCTAGCCTTGTCAAACAGGTTGCTAATGCAACCAATGATGAGGCGGGTGATGGGACCACATGTGCTACTCTTCTTACGCGTGCAATATTTGCTGAAGGATGCAAGTCAGTTGCTGCAGGGATGAATGCAATGGACTTAAGACGAGGCATCACCATGGCAGTTGATGCTGTGGTAACAAACTTAAAGAGCAGAGCACGAATGATCAGCACGTCCGAAGAGATAGCTCAAGTGGGAACCATATCTGCTAATGGAGAAAGGGAAATAGGTGAGCTGATTGCCAAGGCTATGGAGAAAGTTGGAAAAGAGGGAGTCATAACAATCTCAGATGGAAAAACTTTGTACAATGAGTTGGAAGTTGTTGAAGGAATGAAATTAGACAGAGGATACATATCCCCTTATTTCATTACAAACCAGAAAAACCAAAAATGTGAACTGGAAGATCCACTTATTCTAATCCATGAAAAGAAAATATCAAGCATAAATGCTGTTGTGAAAGTCTTAGAATTAGCGCTGAAGAGACAAAGGCCCTTGCTCATTGTTGCTGAAGATATTGAAAGCGATGCTCTAGCCACACTCATTCTAAATAAACTTCGTGCTGGGATCAAGGTCTGTGCTATTAAAGCCCCAGGTTTTGGTGAGAACAGAAAGTCCAATCTGCAGGATCTCGCAGTGCTCACAGGGGGCAACCTTATCACTGAAGAGCTTGGCTTAAATCTTGACAAAGTAGAGCTGGATATGCTGGGCACTTGCAAGAAGGTCACTATTTCCAAGGATGACACTGTTATTCTTGATGGTGCTGGTGACAAAAAAGCTATTGAAGAAAGATGTGAACAGATAAGGTCCGGAATAGAGTTGAGCACTTCTGATTACGACAAGGAAAAATTACAAGAAAGACTAGCTAAACTTTCTGGTGGCGTGGCTGTATTAAAAATTGGAGGTGCCAGTGAAGCTGAAGTTGGTGAGAAAAAGGATAGAGTGACAGATGCATTGAATGCTACAAAGGCAGCTGTAGAAGAGGGCATTGTTCCTGGTGGTGGTGTTGCTCTTCTTTACGCAGCGAAAGAGTTGGAAAAACTTCCAACTGCTAACTTCGATCAGAAGATTGGAGTGCAGATTATTCAAAACGCTCTAAAGACTCCTGTGCACACAATTGCTGCCAATGCCGGAGTTGAGGGAGCTGTGGTAGTTGGTAAGTTGTTGGAGCAAGATAACCCCGACCTTGGGTATGATGCCGCTAAAGCAGGTGAATACGTAGACATGGTTAAGGCTGGAATAATAGATCCACTGAAAGTAATTAGGACTGCCTTGGTGGATGCTGCGAGTGTATCATCTCTGATGACGACAACAGAAGCAATCGTTACTGAAATACCCAAGGACGACAAGGAGGTTCCGTCAATGGGTGGTGGCATGGGAGGAATGGATTATTGA 1668 43.71 VISRLGWSRNYAAKDIRFGVEARALMLKGVEELAEAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDEAGDGTTCATLLTRAIFAEGCKSVAAGMNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILIHEKKISSINAVVKVLELALKRQRPLLIVAEDIESDALATLILNKLRAGIKVCAIKAPGFGENRKSNLQDLAVLTGGNLITEELGLNLDKVELDMLGTCKKVTISKDDTVILDGAGDKKAIEERCEQIRSGIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLPTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNPDLGYDAAKAGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVTEIPKDDKEVPSMGGGMGGMDY 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11273466 11277160 + Bda017156.1 Bda03g01108 4367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01108 555 Gene3D - 147 420 IPR027410 -
Bda03g01108 555 TIGRFAM GroEL: chaperonin GroL 13 538 IPR001844 GO:0042026|GO:0140662
Bda03g01108 555 Gene3D GroEL 202 383 IPR027409 -
Bda03g01108 555 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 3 548 - -
Bda03g01108 555 Hamap Chaperonin GroEL [groEL]. 12 553 IPR001844 GO:0042026|GO:0140662
Bda03g01108 555 CDD GroEL 14 535 IPR001844 GO:0042026|GO:0140662
Bda03g01108 555 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 3 548 - -
Bda03g01108 555 SUPERFAMILY GroEL-intermediate domain like 148 215 IPR027410 -
Bda03g01108 555 SUPERFAMILY GroEL equatorial domain-like 17 533 IPR027413 -
Bda03g01108 555 Gene3D - 16 534 IPR027413 -
Bda03g01108 555 PRINTS 60kDa chaperonin signature 360 385 IPR001844 GO:0042026|GO:0140662
Bda03g01108 555 PRINTS 60kDa chaperonin signature 37 63 IPR001844 GO:0042026|GO:0140662
Bda03g01108 555 PRINTS 60kDa chaperonin signature 408 429 IPR001844 GO:0042026|GO:0140662
Bda03g01108 555 PRINTS 60kDa chaperonin signature 278 301 IPR001844 GO:0042026|GO:0140662
Bda03g01108 555 PRINTS 60kDa chaperonin signature 93 120 IPR001844 GO:0042026|GO:0140662
Bda03g01108 555 Pfam TCP-1/cpn60 chaperonin family 33 535 IPR002423 GO:0005524
Bda03g01108 555 SUPERFAMILY GroEL apical domain-like 195 386 IPR027409 -
Bda03g01108 555 ProSitePatterns Chaperonins cpn60 signature. 415 426 IPR018370 GO:0005524|GO:0006457
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01108 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - zju:107408563 993.801
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01108 Bda-Chr3:11273466 Bda07g00778 Bda-Chr7:9326265 1.24E-165 dispersed
Bda04g00913 Bda-Chr4:58913262 Bda03g01108 Bda-Chr3:11273466 0 transposed
Bda13g00728 Bda-Chr13:8785323 Bda03g01108 Bda-Chr3:11273466 0 transposed
Bda03g01108 Bda-Chr3:11273466 Bda08g00017 Bda-Chr8:153105 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01108 Bda_Chr03 FPKM 8.01601 9.237304 8.690203 8.947075 10.470129 12.367134 10.511089 9.91547 10.427279