Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01113 ATGGTGATTCAATTGAAACAAGAGTTGATTGTGAATAGCTTTAAAACTATTGATGGTCGTGGGGTCAACGTCCACATTGCAAATGGAGCTTGTATTACCATCCAATATGTCACTAATGTTATTATACACGGCCTGCACATTCATGATTGCAAGCCCACTGGCAATGCCATGGTAAGGAGCTCACCAAGTCATTACGGGTGGAGGACAATGGCCGATGGTGATGCCATCTCCATTTTCGGGTCTAGCCATATATGGGTTGATCACAATTCGCTCTCTCATTGCGCTGATGGCCTTGTTGATGCTGTGATGGGCTCAACTGCAATTACAATTTCAAACAATCACTTCACCCACCACAATGAGGTGATGCTGTTAGGCCACAGTGATTCGTATACAAAAGACAAGCAAATGCAAGTTACCATTGCTTTTAACCATTTTGGTGAAGGACTCATCCAGAGAATGCCAAGGTTGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTACGCTATTGGAGGAAGCGGTAACCCAACCATCAACAGCCAGGGCAACAGATATGCAGCTCCAACAAACCCTTTTGCGAAAGAGGTGACAAAGAGGGTAGAAACAGCCCAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGGGAGACCTGTTGTTGAATGGTGCATACTTCACTCCATCTGGTGCTGGAGCTTCTTCAAACTATGCGAGGGCCTCAAGCTTGGGAGCTAAGTCTTCTTCCATGGTTGGATCCATAACATCCAGTGCCGGTGCTCTTCCTTGTCATAGAGGCCGTCAATGTTAG 828 45.41 MVIQLKQELIVNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAFNHFGEGLIQRMPRLCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYAAPTNPFAKEVTKRVETAQSEWKNWNWRSEGDLLLNGAYFTPSGAGASSNYARASSLGAKSSSMVGSITSSAGALPCHRGRQC 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11543447 11544570 - Bda017162.1 Bda03g01113 4372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01113 275 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Bda03g01113 275 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Bda03g01113 275 PRINTS Pollen allergen Amb family signature 246 269 IPR018082 -
Bda03g01113 275 PRINTS Pollen allergen Amb family signature 153 172 IPR018082 -
Bda03g01113 275 PRINTS Pollen allergen Amb family signature 175 194 IPR018082 -
Bda03g01113 275 PRINTS Pollen allergen Amb family signature 217 241 IPR018082 -
Bda03g01113 275 Pfam Pectate lyase 7 190 IPR002022 -
Bda03g01113 275 SMART amb_all 1 198 IPR002022 -
Bda03g01113 275 PANTHER PECTATE LYASE 18-RELATED 1 272 IPR045032 GO:0030570
Bda03g01113 275 SUPERFAMILY Pectin lyase-like 1 275 IPR011050 -
Bda03g01113 275 Gene3D - 1 268 IPR012334 -
Bda03g01113 275 PANTHER OS04G0137100 PROTEIN 1 272 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01113 Bda13g00500 CCT
Bda03g01113 Bda13g00500 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01113 Bda-Chr3:11543447 Bda05g00883 Bda-Chr5:57295485 0 dispersed
Bda03g01113 Bda-Chr3:11543447 Bda05g00882 Bda-Chr5:57283467 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01113 K01728 - jre:108995893 540.806