Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01124 ATGGAGGATCATTCTCCAATGGCGGAAACTCTCGTGAGAAAGCAACCACCATTTTATTTCCAATCTGGGTCAAGCTTTTCCGGTGTTCCAATCATCTGGCCTGCCCTTGCTCCATCGAATACCTCCGGTAACGGCGGTTTTGGAGAATCAAGGCCTGCATCTTCCTCACTTCAGGCTCTTTTTTCTTCCATAGATTCAATAATGGAGAAGTCTTCTGCTGAAAATGCAGCCTCCATTTATGACCTTCGTAGCGTCACTGACAGAAATCATATTTTTCCAAGATTTTCAGAATTTAAATCTGTGAATCCCCCTCTAAATTTCTTGAATTCATTTTCTAAACTTTCACAGACCCAAGTTCATGAATCCCATTCTCCTTCAAGTTCATCGAATTCGACTCTTTTTCTGCAGAATTCTACTGCACTTGATTTGCTTTGTCCACAATTTACATCTTTACTCAGGAAGAACCAAGAATTTAAACCAATGCCAAGTATTTCACGCCTAGTAGAAAGTGAACGGCACAAAATCAACGGGAATTCTCTATCATGGATGAGAGCTAACCCAAAGCAGAAAATGAAGAGCCGAGGAAGAAAGGTTCAGAACCAGAAGAATGGCTCATCAATGGGGTCTTCCTCCAGAGAAAAGATGTTCAGAGGAGTGAGACAAAGACAGTGGGGAAAATGGGTCGCAGAGATAAGATTGCCAAAAACCAGAACAAGGGTCTGGTTAGGCACTTTCAGCACAGCCCAAGAGGCCGCCATTGCTTACGACACTGCTGCTTACATTTTGCGAGGAGAATTCGCACATTTGAATTTTCCAGATCAAACAAACTCTTTCAATCAAACTACAGTTTCTCTTCTTCAATCCAAGCTACAACAAGCAGCAGCTTCTTCTGATCATACAAAAAACAACGAACCCTCGAAGCCGTTGTCGAAGAAACAGGACAGAAAAGAAATGGAGACGATGAATTCAGAAGTAGAAGACGTTCAGCTAAGTAGAATGCCTTCTTTGGACATGAACATTATTTGGGATGCTCTTTTACTGCTTGATTCTTAA 1053 41.79 MEDHSPMAETLVRKQPPFYFQSGSSFSGVPIIWPALAPSNTSGNGGFGESRPASSSLQALFSSIDSIMEKSSAENAASIYDLRSVTDRNHIFPRFSEFKSVNPPLNFLNSFSKLSQTQVHESHSPSSSSNSTLFLQNSTALDLLCPQFTSLLRKNQEFKPMPSISRLVESERHKINGNSLSWMRANPKQKMKSRGRKVQNQKNGSSMGSSSREKMFRGVRQRQWGKWVAEIRLPKTRTRVWLGTFSTAQEAAIAYDTAAYILRGEFAHLNFPDQTNSFNQTTVSLLQSKLQQAAASSDHTKNNEPSKPLSKKQDRKEMETMNSEVEDVQLSRMPSLDMNIIWDALLLLDS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11808012 11809064 - Bda017176.1 Bda03g01124 4383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01124 350 MobiDBLite consensus disorder prediction 186 215 - -
Bda03g01124 350 MobiDBLite consensus disorder prediction 198 212 - -
Bda03g01124 350 SUPERFAMILY DNA-binding domain 215 273 IPR016177 GO:0003677
Bda03g01124 350 Pfam AP2 domain 216 264 IPR001471 GO:0003700|GO:0006355
Bda03g01124 350 CDD AP2 216 274 IPR001471 GO:0003700|GO:0006355
Bda03g01124 350 PRINTS Ethylene responsive element binding protein signature 216 227 IPR001471 GO:0003700|GO:0006355
Bda03g01124 350 PRINTS Ethylene responsive element binding protein signature 238 254 IPR001471 GO:0003700|GO:0006355
Bda03g01124 350 MobiDBLite consensus disorder prediction 304 323 - -
Bda03g01124 350 Gene3D AP2/ERF domain 214 273 IPR036955 GO:0003700|GO:0006355
Bda03g01124 350 SMART rav1_2 215 278 IPR001471 GO:0003700|GO:0006355
Bda03g01124 350 MobiDBLite consensus disorder prediction 289 326 - -
Bda03g01124 350 ProSiteProfiles AP2/ERF domain profile. 215 272 IPR001471 GO:0003700|GO:0006355
Bda03g01124 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 348 - -
Bda03g01124 350 MobiDBLite consensus disorder prediction 289 303 - -
Bda03g01124 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 19 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01124 - - - hbr:110636189 245.743
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01124 Bda08g00035 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01124 Bda-Chr3:11808012 Bda10g00094 Bda-Chr10:2231249 3.56E-29 dispersed
Bda03g01124 Bda-Chr3:11808012 Bda08g00035 Bda-Chr8:292221 2.61E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g903 . . Bda03g01124 Bda08g00035 . . . Bma05g01291 Cmo08g00995 . . . . . . . . . . . . . . . Cla06g00758 Cam06g0808 Cec06g0821 Cco06g0826 Clacu06g0810 Cmu06g0784 Cre06g1562 . . Cone7ag0394 . . . Chy05g00558 . . . . . Bpe05g01141 . . . Sed04g2065 . . Cma08g01023 . Car08g00900 . . . Bhi12g01500 Tan06g2302 Cmetu05g0661 Lac12g2046 Hepe03g0358 . Lcy13g0462 . . . . . . . Lsi09g01142 . . Cme05g00716
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008409 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15728 PF00847 AP2 1.60E-11 CL0081 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01124 Bda_Chr03 FPKM 30.226721 30.225784 15.729348 16.17872 24.960907 24.522715 29.213278 5.727135 4.789012