Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01142 ATGGATCCCGTTGGCGATTGGGGCAACACCCCTCTTCACACTGTCGATCCTGAAATCTTCGATTTGATCGAAAAGGAGAAGCGCCGTCAATGCCGTGGTATCGAGCTCATTGCCTCTGAAAACTTTACCTCCTTCGCCGTCATTCAGGCTCTCGGCAGTCCTCTCACCAACAAATATTCCGAGGGTATGCCCGGCAACCGCTACTACGGTGGCAACGAGTACATCGACGAGATTGAGAATCTCTGTCGCTCTCGAGCTCTTCTCGCGTTTCACCTCGATCCTACCAGGTGGGGCGTCAATGTCCAACCCTACTCTGGTTCTCCCGCCAATTTCGCTGCCTACACGGCCGTACTTCAGCCTCACGACCGTATCATGGGCCTTGATCTTCCTTCCGGAGGTCACCTCACTCACGGCTATTATACTTCCGGTGGCAAGAAGATCTCAGCCACTTCCATCTACTTTGAGAGCTTGCCTTATAAGGTTGATTCCACCACCGGATACATTGATTACGATAAGCTGGAGGAGAAGGCTCTGGATTTCAGGCCCCGCTTGATCATTTGCGGTGGCAGTGCTTATCCGAGAGACTGGGATTATGCCAGATTTAAGGCAATTGCCGATAAGTGCGGTGCCCTTTTGCTTTGTGATATGGCTCACATTAGCGGTCTTGTTGCCGCTCAGGAAGCTGCAAACCCATTCGAGTACTGTGACATTGTTACCACAACCACCCATAAAAGCTTGAGAGGTCCAAGGGCTGGTATGATCTTTTACAGGAAGGGTCCTAAACCAGCAAAAAAGGGTCAGCCAGAAGATGCAGTTTATGATTTTGAAGACAAAATCAACTTTTCTGTCTTCCCCTCACTTCAGGGTGGTCCCCATAATCACCAAATCGGGGCCTTGGCTGTTGCCTTGAAGCAGGCAATGTTACCCGGATTCAAGGCCTATGCCAAGCAAGTAAAGGCAAATGCTGTCGCCCTTGGAAACTTCTTGATGAGCAAGGGATATAAACTTGTCACAGGAGGAACCGAGAATCACCTTGTTCTTTGGGATCTTCGTCCTTTGGGCTTGACAGGCAATAAGGTCGAGAAACTGTGTGATTTGTGCAACATCACTGTGAACAAGAATGCTGTGTTCGGTGATAGCAGTGCCTTGGCTCCTGGAGGTGTTCGAATCGGTACGCCTGCAATGACTTCAAGAGGGTTGGTGGAGAAAGACTTTGAGCAAATAGGAGAGTTCCTTCACCGGTCCGTGACAATCACCCTGGCCATCCAAAAGCAGCATGGAAAGCTATTGAAGGACTTCAACAAGGGCCTCACAAACAACAAGGACATCGAGAATCTTAAGGTTGATGTTGAGAAGTTCTCTTCAACCTTTGACATGCCCGGGTTTCTCCAGTCAGAGATGAAGTTCAAGGATTAA 1416 49.36 MDPVGDWGNTPLHTVDPEIFDLIEKEKRRQCRGIELIASENFTSFAVIQALGSPLTNKYSEGMPGNRYYGGNEYIDEIENLCRSRALLAFHLDPTRWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVDSTTGYIDYDKLEEKALDFRPRLIICGGSAYPRDWDYARFKAIADKCGALLLCDMAHISGLVAAQEAANPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPAKKGQPEDAVYDFEDKINFSVFPSLQGGPHNHQIGALAVALKQAMLPGFKAYAKQVKANAVALGNFLMSKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEKDFEQIGEFLHRSVTITLAIQKQHGKLLKDFNKGLTNNKDIENLKVDVEKFSSTFDMPGFLQSEMKFKD 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12249530 12252128 - Bda017196.1 Bda03g01142 4401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01142 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bda03g01142 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 - -
Bda03g01142 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Bda03g01142 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Bda03g01142 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bda03g01142 471 Gene3D - 41 316 IPR015421 GO:0003824
Bda03g01142 471 SUPERFAMILY PLP-dependent transferases 7 463 IPR015424 -
Bda03g01142 471 CDD SHMT 15 419 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bda03g01142 471 PIRSF SHMT 2 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bda03g01142 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01142 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - jre:109008438 916.761
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01142 Bda08g00042 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01142 Bda-Chr3:12249530 Bda06g00205 Bda-Chr6:2717537 0 dispersed
Bda03g01142 Bda-Chr3:12249530 Bda08g00042 Bda-Chr8:324555 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g913 Blo01g00337 Blo12g00102 Bda03g01142 Bda08g00042 Bpe04g01084 . . Bma05g01299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy05g00570 . . . . . . . . . . . . . . . Car17g00083 . . . . . . . . . . . . . . . . . . . Cme05g00731
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01142 Bda_Chr03 FPKM 14.978635 16.769779 22.721966 24.721582 16.600878 14.560661 17.44228 15.084623 14.337947