Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01166 TTGTTGGAGGAAATTTCTACATTTGACAATGTCAGTGGATCAAATGGGAGAAATAACTCAAATCATTTTGGTTTGCTAAATAGCTCCTACGTATCTACTATGGTTAGTCAATTAAATTCATATGCGCATAATGGGAATACCATTGCAATGGCCTCCAATGTACCCGTAGATATTATGGCCAACGAGGGGTTGCAAATTGAGGATAGCTTTGGGCAGTGGATAAATGATATTGTGTCTGACTTTCCTGGTTCTGTAGATGATCAGTCCTCCATTTTACCTCATTATGATGAATTTACCTCTACTACGATAAATCATCATCCATCTTCTGTGCCAGAGCAAATGTTTATCATAACCGATATCTCTCCTGGATGGGCATTTACTGCAGAAAAAACCAAGATTTTAATAACTGGATTTTTTCACGAAGAGTTTGCTCATCTGGCTAAGTCCAATTTGTTGTGTCTCTGTGGCGATGTTTGTATTCCTACAGAAGTCGTTCAACTTGGAGTTTATCGTTGCCTGGTACCTCCACATCCACCTGGATGTGTAAATATCTATCTCAGTTTAGATGGTCATAAACCAATCAGCCAAGTTATGAATTTTGAGTATCGCAACCAATTACTGGATGGTTCAGGAGTTTCTTTAGACGAAAAGGAAAGGTGGGAGGAGTTTGAAGTTCAGATGCGGCTTCTTGGTTTGCTTTTCTCTACATCGAAGAGCCTGAACATTCTGTCTGGTAAAGTATCACAAAATGCCCTAAAGGTAGCGAGAAACTTTGCTCAAAAAACATCTAACATTGCTAATAGTTGGGCTTATTTGCACAAGTCAATTCAAGATAACAAAATTTCGTTTCCTCTAGCAAAAGATGGCCTATTGGAACTTATTTTAAGGAACAGAGTAAGGGAATGGCTGTTAGAAAGGATTATTGAAGGCTCCAAGAAGAGCACTGAATTTGACGCTTACGGTCAAGGAGTAATACACTTGTGTGCCATCCTGGGATATTCATGGGCTATACAATTATTTGCTTGGTCAGGTTTAACATTGGATTTTCGGGACAAATCTGGATGGACAGCTCTTCACTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAGTTCTTCTATATGCTGGAGCAAAGCCAAACTTGGTTACAGACCCAACCTCAGAAAATCCTGGGGGATGCACAGCTGCTGATCTTGCATATGTAAAGGGTCATGATGGCTTGGCTGGCTATCTTTCAGAAAAGGCATTAGTAGCTCATTTCCAGGAAATGAGTATAGCTGGAAATATAAGTGGTACACTGCAAATCAACACAACTGAGAGGGAGAGTGTAAACCCTGAGAATCTCAGTGAGGAGCAGCTACAAACGGAAGGTACTTTGGCAGCCTACAGAACGGCTGCCGATGCAGCAGCACATATAAATGCTGCATTTCGCGAGCATTCTTATAAGCAAAGAACGAAAGAAGTTCAGGTTTCTACTCCAGAGATGGAAGCGCGCAATATTATTGCAGCTATGAAAATTCAGCATGCATTCCGCAATTATGAAATGCGACGAAAAATGGCAGCTGATGCTCATATACAACAGAGATTTCGTACTTGGAAAATGCGTCAAGATGTCCTTAACATGCGATGTCAAGCTATAAGAGTTCAAGCTGTATTTCGAGGCTTCCAAGTACGGAGGCATTACCGTAAAATTATTTGGTCTGTTGGAGTGCTTGAGAAAGCTATACTACGGTGGCGCTTAAAGAGAAAAGGCTTTCGTGGGCTTCAGGTTGAACCTGTGGAACCAATTGCAGAGGTAAGACAGGAAAGTGATACCGAGGAAGACTTTTACCGTACAAGCCAGAAACAAGCAAGTGAGCGTGTTGAGAGATCTGTTGCACGAGTTCGGGACTTGTTTCGTTCAAGGAAAGCACAAGAAGACTATCAGAAAATGAAGATGGCCCATCTGGAAGCAATGGTAAGTAACACACCGTGA 1977 41.53 LLEEISTFDNVSGSNGRNNSNHFGLLNSSYVSTMVSQLNSYAHNGNTIAMASNVPVDIMANEGLQIEDSFGQWINDIVSDFPGSVDDQSSILPHYDEFTSTTINHHPSSVPEQMFIITDISPGWAFTAEKTKILITGFFHEEFAHLAKSNLLCLCGDVCIPTEVVQLGVYRCLVPPHPPGCVNIYLSLDGHKPISQVMNFEYRNQLLDGSGVSLDEKERWEEFEVQMRLLGLLFSTSKSLNILSGKVSQNALKVARNFAQKTSNIANSWAYLHKSIQDNKISFPLAKDGLLELILRNRVREWLLERIIEGSKKSTEFDAYGQGVIHLCAILGYSWAIQLFAWSGLTLDFRDKSGWTALHWAAYCGREKMVAVLLYAGAKPNLVTDPTSENPGGCTAADLAYVKGHDGLAGYLSEKALVAHFQEMSIAGNISGTLQINTTERESVNPENLSEEQLQTEGTLAAYRTAADAAAHINAAFREHSYKQRTKEVQVSTPEMEARNIIAAMKIQHAFRNYEMRRKMAADAHIQQRFRTWKMRQDVLNMRCQAIRVQAVFRGFQVRRHYRKIIWSVGVLEKAILRWRLKRKGFRGLQVEPVEPIAEVRQESDTEEDFYRTSQKQASERVERSVARVRDLFRSRKAQEDYQKMKMAHLEAMVSNTP 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13068235 13072234 + Bda017230.1 Bda03g01166 4425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01166 658 Pfam Ankyrin repeats (3 copies) 302 382 IPR002110 GO:0005515
Bda03g01166 658 SMART ANK_2a 353 382 IPR002110 GO:0005515
Bda03g01166 658 Gene3D - 286 423 IPR036770 -
Bda03g01166 658 Gene3D Immunoglobulins 110 206 IPR013783 -
Bda03g01166 658 ProSiteProfiles IQ motif profile. 542 566 IPR000048 GO:0005515
Bda03g01166 658 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 654 - -
Bda03g01166 658 ProSiteProfiles Ankyrin repeat profile. 353 385 IPR002110 GO:0005515
Bda03g01166 658 SMART iq_5 499 521 IPR000048 GO:0005515
Bda03g01166 658 SMART iq_5 541 563 IPR000048 GO:0005515
Bda03g01166 658 ProSiteProfiles IQ motif profile. 503 529 IPR000048 GO:0005515
Bda03g01166 658 Gene3D - 521 566 - -
Bda03g01166 658 SUPERFAMILY E set domains 117 203 IPR014756 -
Bda03g01166 658 SUPERFAMILY Ankyrin repeat 312 415 IPR036770 -
Bda03g01166 658 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 8 654 - -
Bda03g01166 658 Pfam IPT/TIG domain 116 202 IPR002909 -
Bda03g01166 658 ProSiteProfiles Ankyrin repeat region circular profile. 353 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01166 K21596 CAMTA; calmodulin-binding transcription activator - fve:101314356 825.469
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01166 Bda08g00378 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01166 Bda-Chr3:13068235 Bda08g00378 Bda-Chr8:3870823 0 dispersed
Bda03g01166 Bda-Chr3:13068235 Bda03g01181 Bda-Chr3:13857554 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00806 . 1 1073 CAMTA Transcription Factor Family AT5G64220 51.9 6.8e-268 920.6
Bda03g01181 . 28 919 CAMTA Transcription Factor Family AT3G16940 53.7 7.4e-262 900.2
Bda03g01166 BCT 28 652 CAMTA Transcription Factor Family AT3G16940 54.8 1.6e-192 669.8
Bda03g01181 . 7 635 CAMTA Transcription Factor Family AT4G16150 55.7 4.2e-205 711.8
Bda08g00378 BCT 9 660 CAMTA Transcription Factor Family AT4G16150 53.6 1.1e-200 697.2
Bda03g01166 BCT 49 377 CAMTA Transcription Factor Family AT4G16150 53.5 5.8e-106 382.5
Bda15g00806 . 1 1073 CAMTA Transcription Factor Family AT5G64220 51.9 6.8e-268 920.6
Bda03g01181 . 7 635 CAMTA Transcription Factor Family AT4G16150 55.7 4.2e-205 711.8
Bda08g00378 BCT 9 660 CAMTA Transcription Factor Family AT4G16150 53.6 1.1e-200 697.2
Bda03g01166 BCT 49 377 CAMTA Transcription Factor Family AT4G16150 53.5 5.8e-106 382.5
Bda03g01181 . 28 919 CAMTA Transcription Factor Family AT3G16940 53.7 7.4e-262 900.2
Bda03g01166 BCT 28 652 CAMTA Transcription Factor Family AT3G16940 54.8 1.6e-192 669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41